Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I6J15_RS01035 Genome accession   NZ_CP068056
Coordinates   207149..207757 (+) Length   202 a.a.
NCBI ID   WP_043894968.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain FDAARGOS_1158     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 202149..212757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J15_RS01010 (I6J15_01010) - 202729..204240 (-) 1512 WP_111712649.1 cell division site-positioning protein MapZ family protein -
  I6J15_RS01015 (I6J15_01015) - 204304..205476 (-) 1173 WP_020916301.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  I6J15_RS01025 (I6J15_01025) gpsB 206098..206427 (-) 330 WP_061409227.1 cell division regulator GpsB -
  I6J15_RS01030 (I6J15_01030) - 206556..207074 (-) 519 WP_111712648.1 DUF1273 domain-containing protein -
  I6J15_RS01035 (I6J15_01035) recU 207149..207757 (+) 609 WP_043894968.1 Holliday junction resolvase RecU Machinery gene
  I6J15_RS01040 (I6J15_01040) pbp1a 207744..210023 (+) 2280 WP_111712647.1 penicillin-binding protein PBP1A -
  I6J15_RS01045 (I6J15_01045) pepC 210115..211452 (-) 1338 WP_020916296.1 aminopeptidase C -
  I6J15_RS01050 (I6J15_01050) nadE 211690..212514 (-) 825 WP_058813675.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23291.73 Da        Isoelectric Point: 9.8743

>NTDB_id=458545 I6J15_RS01035 WP_043894968.1 207149..207757(+) (recU) [Streptococcus lutetiensis strain FDAARGOS_1158]
MVNYPHHLIRKQAAPASRKNTKSTINFANRGMSFEAAINETNNYYLSRDIAVIHKKPTPIQIVKVDYPKRSRAKIVEAYF
RQASTTDYSGVYKGRYIDFEAKETRQKTSMPLKNFHAHQIEHMEHVLKQDGICFVLLHFSTIKETYYLPASALVDFYQIN
LGTKSMPLDYIRKNGYMVTTSSLPQVPYLDIIDQKILGGDHN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=458545 I6J15_RS01035 WP_043894968.1 207149..207757(+) (recU) [Streptococcus lutetiensis strain FDAARGOS_1158]
ATGGTTAATTACCCTCATCATCTTATTCGAAAACAAGCAGCCCCAGCTTCTAGGAAGAACACAAAATCAACGATTAACTT
TGCTAATCGTGGGATGAGTTTTGAAGCAGCAATCAATGAAACTAATAATTACTACTTATCTCGAGATATTGCTGTTATTC
ACAAAAAACCAACCCCAATTCAAATTGTAAAAGTTGATTATCCTAAAAGAAGCCGTGCAAAAATTGTAGAAGCTTACTTT
CGTCAAGCATCAACAACCGATTATTCTGGCGTTTATAAAGGTCGCTATATTGACTTTGAAGCTAAAGAAACTCGGCAAAA
GACATCTATGCCACTTAAAAATTTTCATGCCCACCAGATTGAGCACATGGAACATGTCTTAAAGCAAGATGGGATTTGCT
TTGTATTACTTCATTTTTCAACAATTAAGGAAACTTATTATTTACCTGCTAGTGCTTTAGTGGACTTTTACCAAATTAAT
CTCGGCACCAAATCCATGCCACTTGATTATATCAGAAAAAATGGATATATGGTGACGACAAGTTCACTCCCTCAGGTTCC
TTATTTGGATATTATCGATCAAAAAATTTTAGGCGGTGATCACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.761

97.525

0.495