Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV268_RS15000 Genome accession   NZ_CP056168
Coordinates   3040410..3041036 (-) Length   208 a.a.
NCBI ID   WP_048962070.1    Uniprot ID   A0AAU9BLQ2
Organism   Enterobacter roggenkampii strain RHBSTW-00695     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3035410..3046036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV268_RS14985 (HV268_14985) helD 3035647..3037701 (-) 2055 WP_123922633.1 DNA helicase IV -
  HV268_RS14990 (HV268_14990) - 3037825..3038271 (+) 447 WP_008499924.1 YccF domain-containing protein -
  HV268_RS14995 (HV268_14995) yccS 3038291..3040453 (+) 2163 WP_181530536.1 YccS family putative transporter -
  HV268_RS15000 (HV268_15000) sxy/tfoX 3040410..3041036 (-) 627 WP_048962070.1 TfoX/Sxy family DNA transformation protein Regulator
  HV268_RS15005 (HV268_15005) sulA 3041254..3041763 (+) 510 WP_123923878.1 SOS-induced cell division inhibitor SulA -
  HV268_RS15010 (HV268_15010) ompA 3042118..3043170 (+) 1053 WP_181530538.1 porin OmpA -
  HV268_RS15015 (HV268_15015) matP 3043236..3043688 (-) 453 WP_008499929.1 macrodomain Ter protein MatP -
  HV268_RS15020 (HV268_15020) - 3043875..3045635 (+) 1761 WP_123922634.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23901.49 Da        Isoelectric Point: 9.6030

>NTDB_id=458539 HV268_RS15000 WP_048962070.1 3040410..3041036(-) (sxy/tfoX) [Enterobacter roggenkampii strain RHBSTW-00695]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRTRLKDLPNLTFQLEVLLYEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=458539 HV268_RS15000 WP_048962070.1 3040410..3041036(-) (sxy/tfoX) [Enterobacter roggenkampii strain RHBSTW-00695]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGTTACACCCTGGCGGTCGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGAACTTTACCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTCTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGTCATCAACGAACCCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
ATGAAGCTGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGCGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAAGCACTCAGTATAAAAGTGCTCTTTGCGCTGGAAGGGGCTATCGAAGGGCTGCATGAGGCGGCGCTCCCGGCAGGTAT
CCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAGTCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567