Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   I6J15_RS00425 Genome accession   NZ_CP068056
Coordinates   92982..94640 (-) Length   552 a.a.
NCBI ID   WP_111712670.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain FDAARGOS_1158     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 87982..99640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J15_RS00400 (I6J15_00400) - 89842..90039 (-) 198 WP_020916404.1 hypothetical protein -
  I6J15_RS00405 (I6J15_00405) - 90218..90493 (-) 276 WP_003063767.1 HU family DNA-binding protein -
  I6J15_RS00410 (I6J15_00410) - 90588..91190 (-) 603 WP_020916403.1 YpmS family protein -
  I6J15_RS00415 (I6J15_00415) - 91159..92007 (-) 849 WP_111712671.1 SGNH/GDSL hydrolase family protein -
  I6J15_RS00420 (I6J15_00420) - 92000..92842 (-) 843 WP_111698323.1 DegV family protein -
  I6J15_RS00425 (I6J15_00425) recN 92982..94640 (-) 1659 WP_111712670.1 DNA repair protein RecN Machinery gene
  I6J15_RS00430 (I6J15_00430) - 94654..95124 (-) 471 WP_058813728.1 arginine repressor -
  I6J15_RS00435 (I6J15_00435) - 95111..95935 (-) 825 WP_020916398.1 TlyA family RNA methyltransferase -
  I6J15_RS00440 (I6J15_00440) - 95928..96797 (-) 870 WP_111712669.1 polyprenyl synthetase family protein -
  I6J15_RS00445 (I6J15_00445) - 96797..97012 (-) 216 WP_020916396.1 exodeoxyribonuclease VII small subunit -
  I6J15_RS00450 (I6J15_00450) xseA 97002..98330 (-) 1329 WP_111712668.1 exodeoxyribonuclease VII large subunit -
  I6J15_RS00455 (I6J15_00455) - 98494..99063 (-) 570 WP_020916394.1 L,D-transpeptidase -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62506.78 Da        Isoelectric Point: 4.5760

>NTDB_id=458535 I6J15_RS00425 WP_111712670.1 92982..94640(-) (recN) [Streptococcus lutetiensis strain FDAARGOS_1158]
MLLEISIKNFAIIEEISLTFENGMTVLTGETGAGKSIIIDAMNLMLGARASLDVIRHGANKAEIEGLFSVGENAVLTQIL
EENGIEVTEELIIRREILQNGRSIGRINGQMVNLTTLRAVGQYLVDIHGQHDQEELMKPNMHIRMLDEFGDSQFASVKKL
YQDLFEHYRRLRKRVLTKQKNEQEHKARIEMLEFQIAEIEAAALKSGEDQVLNQKRDKLLNHKHIADTLTNAYVMLDDEE
FSSLSNIRSAMNDLMTLEEFDADYKDMSSNVSEAYYILEEVTKQLSDVIDELDFDAGSLQQIEARLEVIHSITRKYGGSV
DDVLDYYENITKEYNLLTGNDESSDDMEKDLKRLEKELIVAAENLSQERHQLAKNLEAEIKQELADLYMEKADFQVQFSK
GKFNRDGNEAIEFYISTNPGEGFKPLVKVASGGEISRLMLAIKSAFSRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
SHGQVLAISHLPQVIAIADYQFFIEKRSDENTTVSTVRLLSEEERVEEIAKMLAGSDITEMAREQARELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=458535 I6J15_RS00425 WP_111712670.1 92982..94640(-) (recN) [Streptococcus lutetiensis strain FDAARGOS_1158]
ATGCTTTTAGAAATTTCCATTAAAAATTTTGCCATCATTGAGGAAATCTCATTGACTTTTGAAAATGGCATGACCGTTTT
GACGGGTGAAACCGGTGCAGGGAAGTCTATTATTATCGACGCCATGAATCTCATGCTTGGTGCGCGTGCGAGTCTTGATG
TCATCCGTCACGGGGCAAATAAAGCTGAAATTGAAGGCCTCTTTTCAGTTGGTGAAAATGCTGTACTCACGCAAATTTTG
GAGGAAAATGGCATTGAGGTTACGGAAGAATTAATTATCCGTCGTGAAATTTTGCAAAATGGTCGTTCGATTGGTAGGAT
TAATGGACAAATGGTTAACCTGACAACGCTTCGTGCTGTTGGTCAATATTTGGTTGATATCCATGGGCAACATGACCAAG
AAGAATTGATGAAACCAAACATGCACATTCGTATGCTGGATGAATTTGGGGATAGCCAATTTGCTTCGGTCAAGAAACTC
TACCAAGACCTTTTTGAACATTATCGCCGCTTGCGTAAACGTGTTTTAACCAAACAAAAAAATGAGCAAGAACACAAAGC
ACGTATCGAAATGCTGGAATTTCAAATTGCAGAGATTGAAGCAGCTGCCCTAAAATCAGGTGAAGACCAAGTTCTAAACC
AAAAACGTGATAAGTTGTTAAATCACAAACATATCGCAGACACATTAACTAATGCTTATGTCATGCTCGATGATGAAGAG
TTTTCAAGTTTGTCAAATATCCGCTCAGCTATGAACGACTTGATGACTTTGGAAGAATTTGATGCAGATTATAAAGACAT
GTCATCAAATGTTTCTGAAGCTTATTACATTCTAGAAGAAGTGACTAAGCAATTAAGTGATGTTATTGATGAGCTTGATT
TTGATGCTGGTAGTCTTCAACAAATTGAAGCTCGTTTAGAAGTAATTCACAGCATTACCCGTAAATACGGTGGCAGTGTT
GATGATGTTTTAGATTATTACGAAAATATTACCAAAGAATACAATCTTTTGACTGGCAATGATGAGTCATCTGATGATAT
GGAAAAAGATCTCAAACGCTTGGAAAAAGAATTGATTGTTGCTGCTGAGAATCTCAGTCAAGAACGTCATCAATTAGCTA
AAAATTTGGAAGCTGAAATCAAGCAAGAACTGGCTGATTTGTACATGGAAAAGGCTGATTTTCAAGTGCAATTTAGCAAG
GGAAAATTCAATCGTGATGGAAATGAAGCTATTGAATTTTATATTTCAACTAACCCTGGTGAAGGTTTCAAACCTTTGGT
TAAAGTAGCTTCTGGTGGTGAAATTTCACGTTTGATGTTGGCTATAAAATCTGCCTTTTCACGTAAAGAAGACAAGACAA
GTATCGTCTTTGACGAGGTTGATACAGGTGTTTCTGGACGTGTAGCGCAAGCTATTGCTCAAAAAATTTATAAAATCGGC
AGCCATGGGCAAGTTTTGGCGATTTCACACTTACCACAAGTGATTGCGATTGCGGATTATCAATTCTTTATTGAAAAACG
TAGCGATGAAAACACAACAGTTTCAACTGTACGTTTGTTAAGTGAAGAAGAGCGTGTTGAAGAAATTGCTAAAATGCTTG
CTGGTAGTGATATCACGGAAATGGCACGTGAACAAGCGCGTGAATTGCTTAAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.937

100

0.453