Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   KSO_RS00390 Genome accession   NC_020272
Coordinates   69695..70489 (+) Length   264 a.a.
NCBI ID   WP_004393110.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens IT-45     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 64695..75489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS00370 (KSO_000365) walR 64957..65664 (+) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -
  KSO_RS00375 (KSO_000370) walK 65671..67506 (+) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  KSO_RS00380 (KSO_000375) yycH 67496..68854 (+) 1359 WP_004393107.1 two-component system activity regulator YycH -
  KSO_RS00385 (KSO_000380) - 68841..69680 (+) 840 WP_004393108.1 two-component system regulatory protein YycI -
  KSO_RS00390 (KSO_000385) vicX 69695..70489 (+) 795 WP_004393110.1 MBL fold metallo-hydrolase Regulator
  KSO_RS00395 (KSO_000390) htrA 70576..71772 (+) 1197 WP_015387437.1 S1C family serine protease Regulator
  KSO_RS00400 (KSO_000400) - 72239..72451 (+) 213 WP_004393115.1 winged helix-turn-helix domain-containing protein -
  KSO_RS00405 (KSO_000405) - 72448..73866 (+) 1419 WP_015387438.1 sensor histidine kinase -
  KSO_RS00410 (KSO_000410) - 74098..75105 (+) 1008 WP_021734062.1 ThiF family adenylyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29144.22 Da        Isoelectric Point: 6.0280

>NTDB_id=45853 KSO_RS00390 WP_004393110.1 69695..70489(+) (vicX) [Bacillus amyloliquefaciens IT-45]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMERIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=45853 KSO_RS00390 WP_004393110.1 69695..70489(+) (vicX) [Bacillus amyloliquefaciens IT-45]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCATTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAGAATCGGCCGCAAGATAGACGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTACCCGTCTACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTTGATACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTGAAATCTTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTTTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGATATGTGAGCGACAGAATGAAAGGCATCATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGACGTCGGCATGCTGCAAATGGGCAGATACCCTTGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCGAATGAAGATGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCGGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATTCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527

Multiple sequence alignment