Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CJSA_RS05710 Genome accession   NC_017279
Coordinates   1083861..1084820 (+) Length   319 a.a.
NCBI ID   WP_002875425.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni IA3902     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1064157..1088863 1083861..1084820 within 0


Gene organization within MGE regions


Location: 1064157..1088863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJSA_RS05615 (CJSA_1070) pglI 1064157..1065086 (-) 930 WP_002852770.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  CJSA_RS05620 (CJSA_1071) pglH 1065079..1066158 (-) 1080 WP_010891911.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  CJSA_RS05625 (CJSA_1072) pglK 1066155..1067849 (-) 1695 WP_002858308.1 ABC-type lipopolysaccharide transporter PglK -
  CJSA_RS05630 (CJSA_1073) galE 1067843..1068829 (-) 987 WP_002852683.1 UDP-glucose 4-epimerase GalE -
  CJSA_RS05635 (CJSA_1074) - 1068887..1069681 (-) 795 WP_002875164.1 3'-5' exonuclease -
  CJSA_RS05640 (CJSA_1075) waaC 1069747..1070775 (+) 1029 WP_002858077.1 lipopolysaccharide heptosyltransferase I -
  CJSA_RS05645 (CJSA_1076) htrB 1070765..1071652 (+) 888 WP_002858051.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  CJSA_RS05650 (CJSA_1077) - 1071649..1073196 (+) 1548 WP_002858148.1 glycosyltransferase -
  CJSA_RS05655 (CJSA_1078) - 1073200..1074372 (+) 1173 WP_002858013.1 glycosyltransferase family 2 protein -
  CJSA_RS05660 (CJSA_1079) - 1074356..1075351 (-) 996 WP_002858358.1 capsular polysaccharide synthesis protein -
  CJSA_RS05665 (CJSA_1080) - 1075409..1076578 (+) 1170 WP_002858320.1 glycosyltransferase family 2 protein -
  CJSA_RS05670 (CJSA_1081) wlaN 1076567..1077478 (-) 912 WP_002858039.1 beta-1,3 galactosyltransferase -
  CJSA_RS05675 (CJSA_1082) cstIII 1077533..1078417 (+) 885 WP_002858290.1 alpha-2,3-sialyltransferase -
  CJSA_RS05680 (CJSA_1083) neuB1 1078398..1079429 (+) 1032 WP_002858213.1 sialic acid synthase -
  CJSA_RS05685 (CJSA_1084) neuC 1079426..1080541 (+) 1116 WP_002858400.1 UDP-N-acetylglucosamine 2-epimerase -
  CJSA_RS09420 - 1080538..1081452 (+) 915 Protein_1095 beta-1,4-N-acetylgalactosaminyltransferase -
  CJSA_RS09425 - 1081486..1082148 (+) 663 WP_002881429.1 N-acylneuraminate cytidylyltransferase -
  CJSA_RS05700 (CJSA_1086) - 1082143..1082994 (-) 852 WP_014516804.1 glycosyltransferase -
  CJSA_RS05705 (CJSA_1087) waaV 1082978..1083802 (-) 825 WP_002858096.1 glycosyltransferase family 2 protein -
  CJSA_RS05710 (CJSA_1088) waaF 1083861..1084820 (+) 960 WP_002875425.1 lipopolysaccharide heptosyltransferase II Regulator
  CJSA_RS05715 (CJSA_1089) gmhA 1084801..1085361 (-) 561 WP_002858021.1 D-sedoheptulose 7-phosphate isomerase -
  CJSA_RS05720 (CJSA_1090) rfaE1 1085358..1086743 (-) 1386 WP_014516805.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  CJSA_RS05725 (CJSA_1091) rfaD 1086736..1087689 (-) 954 WP_002858041.1 ADP-glyceromanno-heptose 6-epimerase -
  CJSA_RS05730 (CJSA_1092) gmhB 1087690..1088250 (-) 561 WP_002853963.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  CJSA_RS05735 (CJSA_1093) - 1088332..1088634 (+) 303 WP_002852762.1 cytochrome c -
  CJSA_RS05740 (CJSA_1094) ccoS 1088657..1088863 (-) 207 WP_002875422.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36734.30 Da        Isoelectric Point: 10.2412

>NTDB_id=45851 CJSA_RS05710 WP_002875425.1 1083861..1084820(+) (waaF) [Campylobacter jejuni subsp. jejuni IA3902]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=45851 CJSA_RS05710 WP_002875425.1 1083861..1084820(+) (waaF) [Campylobacter jejuni subsp. jejuni IA3902]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment