Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV284_RS00405 Genome accession   NZ_CP056159
Coordinates   90129..90758 (+) Length   209 a.a.
NCBI ID   WP_016261884.1    Uniprot ID   A0A370V9P5
Organism   Escherichia marmotae strain RHBSTW-00814     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 85129..95758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV284_RS00385 (HV284_00385) - 85519..87279 (-) 1761 WP_181474604.1 Lon protease family protein -
  HV284_RS00390 (HV284_00390) matP 87467..87919 (+) 453 WP_001516131.1 macrodomain Ter protein MatP -
  HV284_RS00395 (HV284_00395) ompA 87994..89046 (-) 1053 WP_181474605.1 porin OmpA -
  HV284_RS00400 (HV284_00400) sulA 89402..89911 (-) 510 WP_000288698.1 SOS-induced cell division inhibitor SulA -
  HV284_RS00405 (HV284_00405) sxy/tfoX 90129..90758 (+) 630 WP_016261884.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HV284_RS00410 (HV284_00410) yccS 90721..92883 (-) 2163 WP_122984262.1 YccS family putative transporter -
  HV284_RS00415 (HV284_00415) - 92893..93339 (-) 447 WP_001261229.1 YccF domain-containing protein -
  HV284_RS00420 (HV284_00420) helD 93462..95516 (+) 2055 WP_001516134.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24216.19 Da        Isoelectric Point: 9.5571

>NTDB_id=458481 HV284_RS00405 WP_016261884.1 90129..90758(+) (sxy/tfoX) [Escherichia marmotae strain RHBSTW-00814]
MKSLSYKRIYKSQKYLATLGTIEYRSLFGSYSLTVDDTVFAVVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRFVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKTTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSITPKQEFPVELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=458481 HV284_RS00405 WP_016261884.1 90129..90758(+) (sxy/tfoX) [Escherichia marmotae strain RHBSTW-00814]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAGAAATACCTGGCAACGTTAGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGTCTGACCGTTGACGACACGGTATTTGCGGTAGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGCGCACAATACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGTGGACGGTTCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTTTATGGCGAAATCAACTGAAGCTGGTACGTCTGTCAAAATATTCTCTCGACGCAGCGCT
TAAAGAGAAAACTACACGTAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAAGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCGAAAATGTGTTGGTTGCGGCTGCGGCAGCAAAAT
AGTCTGGTGACAGAAAAGATCTTGTTTATGCTTGAAGGCGCAATTATCGGTATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGATTCTATTACGCCAAAGCAGGAGTTTCCTGTGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(15-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V9P5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

97.129

100

0.971