Detailed information NTG0458429

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JKF55_RS19225
• Genome accession: NZ_CP068035
• Coordinates: 3972951..3973943 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain U90
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3967951..3978943

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JKF55_RS19205 (JKF55_19205)	otnK	3968726..3969988 (+)	1263	WP_063102936.1	3-oxo-tetronate kinase	-
JKF55_RS19210 (JKF55_19210)	ygbL	3969985..3970623 (+)	639	WP_001278994.1	aldolase	-
JKF55_RS19215 (JKF55_19215)	ygbM	3970628..3971404 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
JKF55_RS19220 (JKF55_19220)	ygbN	3971493..3972857 (+)	1365	WP_000104456.1	GntP family transporter	-
JKF55_RS19225 (JKF55_19225)	rpoS	3972951..3973943 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JKF55_RS19230 (JKF55_19230)	nlpD	3974006..3975100 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
JKF55_RS19235 (JKF55_19235)	pcm	3975285..3975911 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JKF55_RS19240 (JKF55_19240)	surE	3975905..3976666 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JKF55_RS19245 (JKF55_19245)	truD	3976647..3977696 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
JKF55_RS19250 (JKF55_19250)	ispF	3977693..3978172 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JKF55_RS19255 (JKF55_19255)	ispD	3978172..3978882 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=458429 JKF55_RS19225 WP_000081550.1 3972951..3973943(-) (rpoS) [Escherichia coli strain U90]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=458429 JKF55_RS19225 WP_000081550.1 3972951..3973943(-) (rpoS) [Escherichia coli strain U90]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715