Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV308_RS07665 Genome accession   NZ_CP056148
Coordinates   1610888..1611514 (+) Length   208 a.a.
NCBI ID   WP_059359997.1    Uniprot ID   -
Organism   Enterobacter roggenkampii strain RHBSTW-00872     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1605888..1616514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV308_RS07645 (HV308_07655) - 1606287..1608047 (-) 1761 WP_155020403.1 Lon protease family protein -
  HV308_RS07650 (HV308_07660) matP 1608234..1608686 (+) 453 WP_008499929.1 macrodomain Ter protein MatP -
  HV308_RS07655 (HV308_07665) ompA 1608751..1609806 (-) 1056 WP_023292865.1 porin OmpA -
  HV308_RS07660 (HV308_07670) sulA 1610161..1610670 (-) 510 WP_023618859.1 SOS-induced cell division inhibitor SulA -
  HV308_RS07665 (HV308_07675) sxy/tfoX 1610888..1611514 (+) 627 WP_059359997.1 TfoX/Sxy family DNA transformation protein Regulator
  HV308_RS07670 (HV308_07680) yccS 1611471..1613633 (-) 2163 WP_023292863.1 YccS family putative transporter -
  HV308_RS07675 (HV308_07685) - 1613653..1614099 (-) 447 WP_155020404.1 YccF domain-containing protein -
  HV308_RS07680 (HV308_07690) helD 1614223..1616277 (+) 2055 WP_059359999.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23912.51 Da        Isoelectric Point: 9.6439

>NTDB_id=458422 HV308_RS07665 WP_059359997.1 1610888..1611514(+) (sxy/tfoX) [Enterobacter roggenkampii strain RHBSTW-00872]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRTRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQENRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=458422 HV308_RS07665 WP_059359997.1 1610888..1611514(+) (sxy/tfoX) [Enterobacter roggenkampii strain RHBSTW-00872]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGTTACACCCTGGCGGTCGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGAACTTTACCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTCTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGTCATCAACGAACCCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCCGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGCGCCAGAGCGAGCTGGCTGAAGATGCGTGCAAAGAAT
AAGGCACTCAGTATAAAAGTGCTCTTTGCGCTGGAAGGGGCAATCGAAGGGCTGCATGAGGCGGCACTCCCGGCAGGTAT
CCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAATCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567