Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JKF55_RS15345 Genome accession   NZ_CP068035
Coordinates   3168918..3170345 (+) Length   475 a.a.
NCBI ID   WP_000980608.1    Uniprot ID   -
Organism   Escherichia coli strain U90     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3163918..3175345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKF55_RS15305 (JKF55_15305) yeeW 3164102..3164296 (+) 195 WP_000988600.1 DUF5983 family protein -
  JKF55_RS15310 (JKF55_15310) - 3164342..3164422 (+) 81 Protein_3034 hypothetical protein -
  JKF55_RS15315 (JKF55_15315) - 3164711..3164839 (-) 129 Protein_3035 transposase domain-containing protein -
  JKF55_RS15320 (JKF55_15320) - 3164911..3165093 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  JKF55_RS15325 (JKF55_15325) tmaR 3165194..3165523 (-) 330 WP_000450409.1 DUF496 family protein -
  JKF55_RS15330 (JKF55_15330) yeeA 3165695..3166753 (-) 1059 WP_001200891.1 FUSC family protein -
  JKF55_RS15335 (JKF55_15335) sbmC 3166951..3167424 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  JKF55_RS15340 (JKF55_15340) dacD 3167543..3168709 (-) 1167 WP_001464461.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JKF55_RS15345 (JKF55_15345) sbcB 3168918..3170345 (+) 1428 WP_000980608.1 exodeoxyribonuclease I Machinery gene
  JKF55_RS15350 (JKF55_15350) tsuB 3170388..3170615 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JKF55_RS15355 (JKF55_15355) tsuA 3170629..3171687 (-) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  JKF55_RS15360 (JKF55_15360) plaP 3171866..3173224 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JKF55_RS15365 (JKF55_15365) yoeI 3173214..3173276 (-) 63 WP_010723108.1 membrane protein YoeI -
  JKF55_RS15370 (JKF55_15370) yeeY 3173491..3174420 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  JKF55_RS15375 (JKF55_15375) yeeZ 3174466..3175290 (-) 825 WP_000754763.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54457.75 Da        Isoelectric Point: 5.6070

>NTDB_id=458416 JKF55_RS15345 WP_000980608.1 3168918..3170345(+) (sbcB) [Escherichia coli strain U90]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=458416 JKF55_RS15345 WP_000980608.1 3168918..3170345(+) (sbcB) [Escherichia coli strain U90]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGGATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTTCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581