Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV312_RS17310 Genome accession   NZ_CP056145
Coordinates   3542565..3543161 (-) Length   198 a.a.
NCBI ID   WP_064170868.1    Uniprot ID   -
Organism   Klebsiella variicola strain RHBSTW-00883     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3537565..3548161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV312_RS17295 (HV312_17295) helD 3537773..3539827 (-) 2055 WP_148273959.1 DNA helicase IV -
  HV312_RS17300 (HV312_17300) - 3539952..3540398 (+) 447 WP_008805896.1 YccF domain-containing protein -
  HV312_RS17305 (HV312_17305) yccS 3540416..3542551 (+) 2136 WP_008805895.1 YccS family putative transporter -
  HV312_RS17310 (HV312_17310) sxy/tfoX 3542565..3543161 (-) 597 WP_064170868.1 TfoX/Sxy family DNA transformation protein Regulator
  HV312_RS17315 (HV312_17315) sulA 3543512..3544021 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  HV312_RS17320 (HV312_17320) ompA 3544374..3545426 (+) 1053 WP_008805892.1 porin OmpA -
  HV312_RS17325 (HV312_17325) matP 3545537..3545989 (-) 453 WP_008805891.1 macrodomain Ter protein MatP -
  HV312_RS17330 (HV312_17330) - 3546175..3547932 (+) 1758 WP_032691146.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22578.07 Da        Isoelectric Point: 9.5520

>NTDB_id=458408 HV312_RS17310 WP_064170868.1 3542565..3543161(-) (sxy/tfoX) [Klebsiella variicola strain RHBSTW-00883]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWCDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=458408 HV312_RS17310 WP_064170868.1 3542565..3543161(-) (sxy/tfoX) [Klebsiella variicola strain RHBSTW-00883]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGTGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAATGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCAGGAGCCCGTTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.254

99.495

0.5