Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   TCCBUS3UF1_RS11305 Genome accession   NC_017278
Coordinates   2237350..2237658 (+) Length   102 a.a.
NCBI ID   WP_014516639.1    Uniprot ID   -
Organism   Thermus sp. CCB_US3_UF1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2232350..2242658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TCCBUS3UF1_RS11270 (TCCBUS3UF1_22490) - 2232764..2233228 (+) 465 WP_014516632.1 hypothetical protein -
  TCCBUS3UF1_RS11275 (TCCBUS3UF1_22500) pfkA 2233205..2234173 (-) 969 WP_014516633.1 6-phosphofructokinase -
  TCCBUS3UF1_RS11280 (TCCBUS3UF1_22510) rsmI 2234170..2234976 (-) 807 WP_014516634.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  TCCBUS3UF1_RS11285 (TCCBUS3UF1_22520) - 2234978..2235475 (-) 498 WP_014516635.1 hypothetical protein -
  TCCBUS3UF1_RS11290 (TCCBUS3UF1_22530) - 2235513..2236040 (-) 528 WP_014516636.1 inorganic diphosphatase -
  TCCBUS3UF1_RS11295 (TCCBUS3UF1_22540) - 2236051..2236680 (-) 630 WP_014516637.1 glycerophosphodiester phosphodiesterase -
  TCCBUS3UF1_RS11300 (TCCBUS3UF1_22550) - 2236703..2237377 (+) 675 WP_014516638.1 hypothetical protein -
  TCCBUS3UF1_RS11305 (TCCBUS3UF1_22560) comEA 2237350..2237658 (+) 309 WP_014516639.1 helix-hairpin-helix domain-containing protein Machinery gene
  TCCBUS3UF1_RS11310 (TCCBUS3UF1_22570) comA/comEC 2237708..2239714 (+) 2007 WP_041434063.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  TCCBUS3UF1_RS11315 (TCCBUS3UF1_22580) - 2239702..2240514 (-) 813 WP_014516641.1 ParB/RepB/Spo0J family partition protein -
  TCCBUS3UF1_RS11320 (TCCBUS3UF1_22590) soj 2240498..2241253 (-) 756 WP_041434065.1 chromosome-partitioning ATPase Soj -
  TCCBUS3UF1_RS11325 (TCCBUS3UF1_22600) rsmG 2241240..2241965 (-) 726 WP_014516643.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11020.10 Da        Isoelectric Point: 9.6556

>NTDB_id=45837 TCCBUS3UF1_RS11305 WP_014516639.1 2237350..2237658(+) (comEA) [Thermus sp. CCB_US3_UF1]
MVLGYLLAVALLGLLALWPKVAPGPGPVAVEVWAEPRFTPPPPEPISLNRASLEELEALPGIGPTLARRIVEGRPYGKVE
DLLRVKGIGPATLERLRPYVRP

Nucleotide


Download         Length: 309 bp        

>NTDB_id=45837 TCCBUS3UF1_RS11305 WP_014516639.1 2237350..2237658(+) (comEA) [Thermus sp. CCB_US3_UF1]
GTGGTCCTTGGCTACCTCCTGGCGGTAGCCCTCCTGGGCCTCCTGGCCCTGTGGCCCAAGGTGGCCCCGGGACCCGGCCC
CGTGGCAGTGGAGGTCTGGGCAGAGCCCCGCTTCACCCCTCCACCCCCGGAGCCCATCAGCCTGAACCGGGCCAGCCTGG
AGGAGCTGGAGGCCCTGCCCGGTATCGGCCCCACCCTGGCGCGGAGGATCGTGGAGGGCCGGCCTTACGGGAAGGTGGAG
GACCTCCTGCGGGTGAAGGGGATCGGGCCGGCCACCCTGGAGCGGCTCCGACCCTACGTGCGCCCCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(45-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Thermus thermophilus HB27

76.471

100

0.765
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.561

80.392

0.382

Multiple sequence alignment