Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV328_RS14275 Genome accession   NZ_CP056129
Coordinates   2956628..2957254 (-) Length   208 a.a.
NCBI ID   WP_048962070.1    Uniprot ID   A0AAU9BLQ2
Organism   Enterobacter roggenkampii strain RHBSTW-00925     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2951628..2962254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV328_RS14260 (HV328_14260) helD 2951865..2953919 (-) 2055 WP_047745101.1 DNA helicase IV -
  HV328_RS14265 (HV328_14265) - 2954043..2954489 (+) 447 WP_008499924.1 YccF domain-containing protein -
  HV328_RS14270 (HV328_14270) yccS 2954509..2956671 (+) 2163 WP_047745100.1 YccS family putative transporter -
  HV328_RS14275 (HV328_14275) sxy/tfoX 2956628..2957254 (-) 627 WP_048962070.1 TfoX/Sxy family DNA transformation protein Regulator
  HV328_RS14280 (HV328_14280) sulA 2957472..2957981 (+) 510 WP_023618859.1 SOS-induced cell division inhibitor SulA -
  HV328_RS14285 (HV328_14285) ompA 2958336..2959391 (+) 1056 WP_045417251.1 porin OmpA -
  HV328_RS14290 (HV328_14290) matP 2959456..2959908 (-) 453 WP_008499929.1 macrodomain Ter protein MatP -
  HV328_RS14295 (HV328_14295) - 2960095..2961855 (+) 1761 WP_023327040.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23901.49 Da        Isoelectric Point: 9.6030

>NTDB_id=458339 HV328_RS14275 WP_048962070.1 2956628..2957254(-) (sxy/tfoX) [Enterobacter roggenkampii strain RHBSTW-00925]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRTRLKDLPNLTFQLEVLLYEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=458339 HV328_RS14275 WP_048962070.1 2956628..2957254(-) (sxy/tfoX) [Enterobacter roggenkampii strain RHBSTW-00925]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGTTACACCCTGGCAGTGGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGAACTTTACCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTCTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGCCATCAACGAACCCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
ATGAAGCCGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGCGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAAGCACTCAGTATAAAAGTGCTCTTTGCGCTGGAAGGGGCTATCGAAGGGCTGCATGAGGCGGCGCTCCCGGCAGGTAT
CCGCCGGGAACTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAGTCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567