Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpE   Type   Regulator
Locus tag   JJN14_RS07095 Genome accession   NZ_CP067992
Coordinates   1409513..1411771 (+) Length   752 a.a.
NCBI ID   WP_201058263.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V7-A3     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1404513..1416771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS07070 (JJN14_07070) gyrB 1404566..1406512 (-) 1947 WP_201058262.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  JJN14_RS07075 (JJN14_07075) - 1406527..1407090 (-) 564 WP_033681420.1 HAD family hydrolase -
  JJN14_RS07080 (JJN14_07080) - 1407443..1408177 (-) 735 WP_000140957.1 amino acid ABC transporter ATP-binding protein -
  JJN14_RS07085 (JJN14_07085) - 1408177..1408860 (-) 684 WP_033686685.1 amino acid ABC transporter permease -
  JJN14_RS07090 (JJN14_07090) - 1409051..1409281 (+) 231 WP_000443570.1 DUF1797 family protein -
  JJN14_RS07095 (JJN14_07095) clpE 1409513..1411771 (+) 2259 WP_201058263.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  JJN14_RS07100 (JJN14_07100) - 1411907..1412359 (+) 453 WP_201058264.1 NUDIX hydrolase -
  JJN14_RS07105 (JJN14_07105) - 1412418..1412717 (+) 300 WP_000767189.1 DUF1827 family protein -
  JJN14_RS07110 (JJN14_07110) - 1412852..1413487 (+) 636 WP_201058265.1 GNAT family N-acetyltransferase -
  JJN14_RS07115 (JJN14_07115) metK 1413571..1414761 (-) 1191 WP_201058266.1 methionine adenosyltransferase -
  JJN14_RS07120 (JJN14_07120) - 1415122..1416465 (-) 1344 WP_061589833.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 83658.07 Da        Isoelectric Point: 5.3672

>NTDB_id=458243 JJN14_RS07095 WP_201058263.1 1409513..1411771(+) (clpE) [Streptococcus mitis strain S022-V7-A3]
MLCQNCKINDSTIHLYTNLNGKQKQIDLCQNCYKIIKTDPNNSLFKGMTDLNNRDFDPFGDFFNDLNNFRPSNNTPPTPP
TQSGGGYGGNGGYGSQNSGPAQTPPPSQEKGLLEEFGINVTEIARRGDIDPVIGRDDEIIRVIEILNRRTKNNPVLIGEP
GVGKTAVVEGLAQKIVDGDVPHKLQGKQVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRKREDIILFIDEIHEIVGAGSA
GDGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPTVDETITILKGIQKKYEDYHHVQYTDAA
IEAAATLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKVIDQRLIEAENLKSQATREEDFEKAAYFRDQIAKYKEL
QKKKVTDQDTPIISEKTIEHIIEQKTNIPVGDLKEKEQSQLIHLAEDLKSHVIGQDDAVDKIAKAIRRNRVGLGTPNRPI
GSFLFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHSVAKLVGAPPGYVGYDEAGQLTEKVRRNPYSLILLDE
VEKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDAIIIMTSNAGTGKAEASVGFGAAREGRTNSVLGELGNFFSPEFMNRF
DGIIEFKALSKDNLLQIVKLMLADVNKRLSSNNIHLDVTDKVKEKLVDLGYDPKMGARPLRRTIQDYIEDAITDYYLENP
SEKDLKAVMTSKGNIQIKSAKKAEVKTSEKEV

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=458243 JJN14_RS07095 WP_201058263.1 1409513..1411771(+) (clpE) [Streptococcus mitis strain S022-V7-A3]
ATGCTTTGTCAAAACTGTAAAATCAATGACTCAACAATTCATCTTTATACCAATCTTAACGGAAAGCAAAAACAAATTGA
CCTTTGTCAAAACTGCTATAAGATTATCAAGACAGATCCTAACAATAGCCTCTTTAAAGGTATGACGGATCTGAACAATC
GTGACTTTGATCCCTTTGGTGATTTCTTCAATGACCTAAACAATTTTAGACCTTCTAACAACACTCCTCCGACTCCCCCA
ACCCAATCAGGTGGAGGCTACGGTGGAAACGGCGGTTATGGTTCCCAAAATAGTGGACCTGCTCAAACTCCTCCACCAAG
CCAAGAAAAAGGCCTGCTGGAAGAATTTGGTATCAACGTAACTGAAATTGCCCGTCGTGGAGATATTGACCCCGTTATTG
GGCGCGACGATGAGATTATCCGTGTTATCGAAATTCTCAATCGCAGAACCAAGAATAATCCTGTTCTTATCGGTGAACCA
GGTGTCGGAAAAACTGCCGTTGTCGAAGGTCTAGCTCAGAAAATCGTTGATGGCGACGTTCCACATAAACTCCAAGGTAA
ACAAGTCATCCGTCTGGATGTGGTTAGCCTAGTTCAAGGAACGGGTATTCGAGGACAATTTGAAGAACGCATGCAAAAGC
TCATGGAAGAAATTCGAAAACGTGAAGACATTATTCTCTTTATCGATGAAATCCATGAAATTGTTGGTGCTGGTTCTGCG
GGCGATGGCAATATGGATGCAGGAAATATCCTCAAGCCCGCCCTTGCTCGTGGGGAACTGCAACTGGTCGGTGCCACTAC
CCTCAATGAATACCGTATCATTGAAAAAGATGCTGCCCTAGAGCGTCGTATGCAACCTGTTAAGGTCGATGAACCAACAG
TGGACGAAACAATCACAATCCTCAAAGGTATTCAAAAGAAATACGAAGACTACCACCACGTTCAGTATACCGATGCTGCA
ATTGAAGCAGCTGCAACTCTTTCCAATCGCTACATCCAAGATCGCTTCTTGCCTGACAAGGCCATCGACCTCCTGGATGA
AGCTGGTTCTAAGATGAACTTGACCTTGAATTTTGTGGATCCTAAAGTGATTGATCAACGCTTGATTGAGGCTGAAAATC
TCAAATCTCAAGCTACACGAGAGGAAGATTTTGAGAAGGCAGCTTATTTCCGCGACCAGATTGCCAAGTATAAGGAACTG
CAAAAGAAAAAGGTCACAGACCAAGATACTCCTATCATCAGTGAGAAAACCATTGAGCACATTATCGAGCAGAAAACCAA
TATCCCTGTTGGCGATTTGAAAGAGAAAGAACAATCTCAACTCATCCATCTAGCTGAAGACCTCAAGTCTCATGTTATTG
GCCAAGATGATGCAGTCGATAAGATTGCCAAGGCTATTCGCCGTAATCGTGTCGGTCTCGGTACGCCTAACCGCCCAATC
GGAAGCTTCCTATTTGTTGGCCCAACTGGTGTCGGTAAGACAGAACTTTCCAAACAACTAGCCATTGAACTTTTTGGTTC
TGCTGACAGCATGATTCGCTTTGATATGAGTGAATACATGGAAAAACACAGTGTGGCTAAGTTGGTCGGTGCCCCTCCAG
GTTATGTCGGCTACGACGAGGCTGGGCAACTAACTGAAAAAGTCCGCCGTAATCCATATTCTCTCATCCTTCTAGATGAA
GTGGAAAAAGCTCACCCTGATGTTATGCACATGTTCCTTCAAGTCTTGGACGATGGGCGTTTGACAGATGGTCAAGGACG
TACCGTTAGCTTCAAGGATGCCATCATCATTATGACTTCAAATGCCGGGACTGGTAAAGCCGAAGCCAGCGTTGGTTTTG
GAGCTGCTAGAGAAGGACGTACCAATTCTGTTCTCGGTGAACTCGGTAACTTCTTTAGCCCAGAGTTTATGAACCGTTTT
GATGGTATTATCGAATTTAAGGCTCTCAGCAAGGACAACCTCCTTCAGATTGTCAAGCTTATGCTTGCAGACGTTAACAA
GCGCCTTTCTAGCAACAACATTCATTTGGATGTAACTGACAAGGTTAAGGAAAAATTGGTTGACCTCGGCTATGATCCAA
AAATGGGGGCGCGCCCACTTCGTCGTACTATTCAAGACTATATTGAAGACGCAATCACTGACTACTACCTTGAAAATCCA
AGTGAAAAAGACCTCAAGGCAGTTATGACCAGCAAGGGCAACATTCAAATCAAATCTGCCAAAAAAGCTGAAGTAAAAAC
TTCTGAAAAAGAAGTATAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(155-274)

AAA domain (Cdc48 subfamily) (AAA_2)

(478-641)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(649-723)

AAA lid domain (AAA_lid_9)

(293-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus pneumoniae Rx1

98.269

99.867

0.981
  clpE Streptococcus pneumoniae D39

98.269

99.867

0.981
  clpE Streptococcus pneumoniae R6

98.269

99.867

0.981
  clpE Streptococcus pneumoniae TIGR4

98.136

99.867

0.98
  clpE Streptococcus mutans UA159

83.2

99.734

0.83
  clpC Lactococcus lactis subsp. cremoris KW2

75.626

100

0.763
  clpC Bacillus subtilis subsp. subtilis str. 168

51.863

89.229

0.463
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

48.166

83.378

0.402
  clpC Streptococcus pneumoniae TIGR4

47.227

83.91

0.396
  clpC Streptococcus pneumoniae Rx1

47.227

83.91

0.396
  clpC Streptococcus pneumoniae D39

47.227

83.91

0.396
  clpC Streptococcus mutans UA159

46.89

83.378

0.391
  clpC Streptococcus thermophilus LMD-9

46.955

82.979

0.39
  clpC Streptococcus thermophilus LMG 18311

46.56

83.112

0.387