Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   JJN14_RS04945 Genome accession   NZ_CP067992
Coordinates   1005625..1006695 (+) Length   356 a.a.
NCBI ID   WP_172930548.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V7-A3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1000625..1011695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS04915 (JJN14_04915) - 1000915..1002465 (+) 1551 WP_201059105.1 ClC family H(+)/Cl(-) exchange transporter -
  JJN14_RS04920 (JJN14_04920) - 1002721..1002972 (+) 252 WP_416069292.1 hypothetical protein -
  JJN14_RS04925 (JJN14_04925) - 1003166..1003588 (+) 423 WP_201059106.1 hypothetical protein -
  JJN14_RS04930 (JJN14_04930) - 1003588..1004841 (+) 1254 WP_201059107.1 hypothetical protein -
  JJN14_RS04935 (JJN14_04935) - 1004823..1005215 (+) 393 WP_201059108.1 hypothetical protein -
  JJN14_RS04940 (JJN14_04940) - 1005196..1005486 (+) 291 WP_201059109.1 hypothetical protein -
  JJN14_RS04945 (JJN14_04945) xerS 1005625..1006695 (+) 1071 WP_172930548.1 tyrosine recombinase XerS Machinery gene
  JJN14_RS04950 (JJN14_04950) - 1006771..1007760 (-) 990 WP_000873999.1 lipoate--protein ligase -
  JJN14_RS04955 (JJN14_04955) lpdA 1007820..1009523 (-) 1704 WP_265342531.1 dihydrolipoyl dehydrogenase -
  JJN14_RS04960 (JJN14_04960) - 1009569..1010612 (-) 1044 WP_201059110.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41198.29 Da        Isoelectric Point: 9.6757

>NTDB_id=458225 JJN14_RS04945 WP_172930548.1 1005625..1006695(+) (xerS) [Streptococcus mitis strain S022-V7-A3]
MKREILLERIDKLKQIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKMSNIPLSVLENMSKKDME
AFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=458225 JJN14_RS04945 WP_172930548.1 1005625..1006695(+) (xerS) [Streptococcus mitis strain S022-V7-A3]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAAATCATGCCCTGGTATGTTCTGGAATACTATCAATC
TAAGCTGGCTGTGCCCTACAGTTTTACAACCTTGTACGAATACCTCAAGGAATACGATCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATATCAAACGCCGATAAAATGTCTAATATTCCTTTATCTGTCTTGGAAAATATGTCTAAGAAAGACATGGAA
GCTTTTATCCTTTATCTACGTGAACGTCCTTTACTGAATGCTAATACAACAAAGCAAGGTGTCTCACAGACAACCATCAA
TCGTACTTTGTCAGCACTTTCTAGTCTTTATAAGTATTTGACTGAGGAAGTTGAAAACGATCAGGGAGAGCCTTATTTCT
ATCGTAATGTAATGAAGAAAGTTTCAACAAAGAAAAAGAAAGAAACTCTTGCTGCAAGAGCTGAAAACATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTCCTAACTTATATCGATCAAGAGTACCCACAACAGCTCTCAAATCGAGCTCT
TTCATCATTTAATAAAAATAAAGAACGTGATTTGGCCATCATTGCCCTTCTCTTGGCATCTGGTGTCCGCTTATCTGAAG
CTGTTAATCTGGATCTAAGAGACCTCAATCTCAAGATGATGGTTATTGATGTCACTCGAAAAGGGGGCAAACGTGACTCG
GTCAATGTCGCGGCCTTTGCAAAACCTTATCTAGAGAATTATTTAGCCATTCGTAATCAACGCTATAAGACAGAAAAAAC
AGATACAGCCCTTTTTTTGACACTCTACAGAGGCGTTCCTAATCGTATCGATGCTTCCAGTGTGGAAAAGATGGTTGCTA
AGTACTCTGAGGACTTCAAAGTGCGTGTAACACCTCATAAACTACGACATACCCTAGCAACTAGGCTCTATGATGCCACT
AAATCGCAAGTTTTGGTCAGTCACCAGCTAGGACATGCCAGTACACAAGTCACTGACCTCTATACTCATATCGTCAATGA
TGAACAAAAGAATGCTCTAGATAGTCTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(70-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

98.596

100

0.986