Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JJN14_RS04545 Genome accession   NZ_CP067992
Coordinates   918570..920237 (+) Length   555 a.a.
NCBI ID   WP_201059057.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V7-A3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 913570..925237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS04515 (JJN14_04515) udk 914163..914801 (+) 639 WP_001181377.1 uridine kinase -
  JJN14_RS04520 (JJN14_04520) xseA 914929..916269 (+) 1341 WP_201059054.1 exodeoxyribonuclease VII large subunit -
  JJN14_RS04525 (JJN14_04525) - 916247..916459 (+) 213 WP_084918279.1 exodeoxyribonuclease VII small subunit -
  JJN14_RS04530 (JJN14_04530) - 916456..917331 (+) 876 WP_201059055.1 polyprenyl synthetase family protein -
  JJN14_RS04535 (JJN14_04535) - 917324..918139 (+) 816 WP_201059056.1 TlyA family RNA methyltransferase -
  JJN14_RS04540 (JJN14_04540) - 918132..918563 (+) 432 WP_049499393.1 arginine repressor -
  JJN14_RS04545 (JJN14_04545) recN 918570..920237 (+) 1668 WP_201059057.1 DNA repair protein RecN Machinery gene
  JJN14_RS04550 (JJN14_04550) - 920239..920967 (+) 729 WP_201059058.1 metallophosphoesterase family protein -
  JJN14_RS04555 (JJN14_04555) lepA 921046..922869 (+) 1824 WP_061771368.1 translation elongation factor 4 -
  JJN14_RS04560 (JJN14_04560) - 923116..923811 (+) 696 WP_042751080.1 hypothetical protein -
  JJN14_RS04565 (JJN14_04565) - 923996..924607 (+) 612 WP_201059059.1 hypothetical protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62847.21 Da        Isoelectric Point: 4.5817

>NTDB_id=458219 JJN14_RS04545 WP_201059057.1 918570..920237(+) (recN) [Streptococcus mitis strain S022-V7-A3]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLEMGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDQEELMRPQLHIQMLDEFGDTGFWALKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLSLNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGETV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVDLAGQLASARHDLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNEHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=458219 JJN14_RS04545 WP_201059057.1 918570..920237(+) (recN) [Streptococcus mitis strain S022-V7-A3]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGAATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCTACGACAGATG
TTATTCGTCATGGTGCGCCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGCCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTGGAAATGGGGGATGAGATTATCATCCGTCGGGAAATTCTGCAAAATGGTCGTAGTATCAGCCGTGT
CAATGGTCAGATGGTTAATCTGTCTGTTTTGCGCGCTATTGGGCAACATCTGGTAGATATTCATGGTCAGCATGACCAAG
AGGAGTTAATGCGTCCCCAACTGCATATTCAAATGTTGGATGAATTTGGTGATACAGGCTTTTGGGCCTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGAAAAATGCGTAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATTGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCGGCAAACTTGCAGGCTGGAGAAGACCTGTCTCTCAACC
AAGAGCGTGATAAACTTCTTAATCATAAAAATATTGCGGATACGCTGACCAATGCGTACAGTATGTTGGACAATGAAGAC
TTTTCAAGTCTGGCCAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTTGAAGAGTACGACCCTGAATACCGTGAAAT
TTCAAGCTCTTTGTCTGAGACATACTATGTCTTAGAAGACATTAGCAAGCGTTTGGAAGCTATTATTGAGGACCTTGATT
TTGATGGCAATCGTCTCATGCAGGTCGAGAATCGTTTGGACCTCCTTCATACTATTACCCGTAAGTATGGTGAGACTGTT
GATGATGTCTTGCTTTATTTTGCTAAAATTACAGAAGAATACAATCTCTTGACAGGCAATAACCTTTCTTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTTAATCTTGTCGATTTGGCAGGTCAGCTTGCCTCTGCTCGTCATGATTTGGCCC
AGCAGCTCGAAGCTGAGATTAAACAAGAACTTCAAGACCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGCAAG
GGCAAATTCAGTCGTGAGGGCAATGAAACGGTCGAGTTTTACATTTCAACCAATCCTGGCGAAGACTTTAAACCCTTGGT
CAAGGTTGCGTCTGGTGGGGAATTATCTCGTCTCATGCTAGCTATTAAATCTGCCTTTTCTCGTAAAGAAGGTAAGACCA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTAGCTCAGGCCATCGCGCAGAAGATTCACAAGATTGGT
CAGCATGGTCAGGTTCTTGCTATTTCCCATTTACCACAAGTGATTGCGATTGCGGATTATCAGTTCTTTATTGAGAAGAT
TAGCAATGAGCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTTGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CTGGTGATGATGTGACGGAAGCAGCCCTGACGCAAGCTAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.606

100

0.436