Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JI426_RS10810 Genome accession   NZ_CP067426
Coordinates   2194054..2195481 (-) Length   475 a.a.
NCBI ID   WP_000980620.1    Uniprot ID   -
Organism   Escherichia coli O22:H8 strain 154     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2189054..2200481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JI426_RS10780 (JI426_002126) yeeZ 2189109..2189933 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  JI426_RS10785 (JI426_002127) yeeY 2189979..2190908 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  JI426_RS10790 yoeI 2191123..2191185 (+) 63 WP_010723108.1 membrane protein YoeI -
  JI426_RS10795 (JI426_002128) plaP 2191175..2192533 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JI426_RS10800 (JI426_002129) tsuA 2192712..2193770 (+) 1059 WP_000492311.1 thiosulfate utilization transporter TsuA/YeeE -
  JI426_RS10805 (JI426_002130) tsuB 2193784..2194011 (+) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JI426_RS10810 (JI426_002131) sbcB 2194054..2195481 (-) 1428 WP_000980620.1 exodeoxyribonuclease I Machinery gene
  JI426_RS10815 (JI426_002132) dacD 2195690..2196856 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JI426_RS10820 (JI426_002133) sbmC 2196975..2197448 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  JI426_RS10825 (JI426_002134) yeeA 2197646..2198704 (+) 1059 WP_033817082.1 FUSC family protein -
  JI426_RS10830 (JI426_002135) tmaR 2198876..2199205 (+) 330 WP_000450409.1 DUF496 family protein -
  JI426_RS10835 (JI426_002136) - 2199306..2199749 (-) 444 WP_096844646.1 EutP/PduV family microcompartment system protein -
  JI426_RS10840 (JI426_002137) pduU 2199754..2200104 (-) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4740

>NTDB_id=458129 JI426_RS10810 WP_000980620.1 2194054..2195481(-) (sbcB) [Escherichia coli O22:H8 strain 154]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=458129 JI426_RS10810 WP_000980620.1 2194054..2195481(-) (sbcB) [Escherichia coli O22:H8 strain 154]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCATTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577