Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JI426_RS02505 Genome accession   NZ_CP067426
Coordinates   538392..538859 (-) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli O22:H8 strain 154     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 533392..543859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JI426_RS02480 (JI426_000485) rpsG 533533..534003 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  JI426_RS02485 (JI426_000486) fusA 534100..536214 (+) 2115 WP_000124700.1 elongation factor G -
  JI426_RS02490 (JI426_000487) tuf 536285..537469 (+) 1185 WP_000031783.1 elongation factor Tu -
  JI426_RS02495 (JI426_000488) bfd 537652..537846 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  JI426_RS02500 (JI426_000489) bfr 537919..538395 (+) 477 WP_000675515.1 bacterioferritin -
  JI426_RS02505 (JI426_000490) pilD 538392..538859 (-) 468 WP_000340171.1 A24 family peptidase Machinery gene
  JI426_RS02510 (JI426_000491) rpsJ 539238..539549 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  JI426_RS02515 (JI426_000492) rplC 539582..540211 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  JI426_RS02520 (JI426_000493) rplD 540222..540827 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  JI426_RS02525 (JI426_000494) rplW 540824..541126 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  JI426_RS02530 (JI426_000495) rplB 541144..541965 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  JI426_RS02535 (JI426_000496) rpsS 541982..542260 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  JI426_RS02540 (JI426_000497) rplV 542275..542607 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  JI426_RS02545 (JI426_000498) rpsC 542625..543326 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  JI426_RS02550 (JI426_000499) rplP 543339..543749 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=458102 JI426_RS02505 WP_000340171.1 538392..538859(-) (pilD) [Escherichia coli O22:H8 strain 154]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=458102 JI426_RS02505 WP_000340171.1 538392..538859(-) (pilD) [Escherichia coli O22:H8 strain 154]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361