Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HED12_RS01945 Genome accession   NZ_CP056077
Coordinates   219284..219913 (-) Length   209 a.a.
NCBI ID   WP_096938872.1    Uniprot ID   -
Organism   Escherichia coli strain MS1170     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 214284..224913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HED12_RS01930 (HED12_01920) helD 214526..216580 (-) 2055 WP_202791755.1 DNA helicase IV -
  HED12_RS01935 (HED12_01925) yccF 216703..217149 (+) 447 WP_001261236.1 YccF domain-containing protein -
  HED12_RS01940 (HED12_01930) yccS 217159..219321 (+) 2163 WP_122996668.1 YccS family putative transporter -
  HED12_RS01945 (HED12_01935) sxy/tfoX 219284..219913 (-) 630 WP_096938872.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HED12_RS01950 (HED12_01940) sulA 220131..220640 (+) 510 WP_000288694.1 SOS-induced cell division inhibitor SulA -
  HED12_RS01955 (HED12_01945) ompA 220996..222036 (+) 1041 WP_001313715.1 porin OmpA -
  HED12_RS01960 (HED12_01950) matP 222111..222563 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  HED12_RS01965 (HED12_01955) ycbZ 222749..224509 (+) 1761 WP_000156498.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24132.99 Da        Isoelectric Point: 9.2180

>NTDB_id=458079 HED12_RS01945 WP_096938872.1 219284..219913(-) (sxy/tfoX) [Escherichia coli strain MS1170]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPADLE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=458079 HED12_RS01945 WP_096938872.1 219284..219913(-) (sxy/tfoX) [Escherichia coli strain MS1170]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGACCTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995