Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JJF91_RS08895 Genome accession   NZ_CP067399
Coordinates   1849068..1850492 (-) Length   474 a.a.
NCBI ID   WP_032329337.1    Uniprot ID   -
Organism   Escherichia coli strain XJW9B263     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1844068..1855492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJF91_RS08865 (JJF91_08815) yeeZ 1844123..1844947 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  JJF91_RS08870 (JJF91_08820) yeeY 1844993..1845922 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  JJF91_RS08875 (JJF91_08825) yoeI 1846137..1846199 (+) 63 WP_010723108.1 membrane protein YoeI -
  JJF91_RS08880 (JJF91_08830) plaP 1846189..1847547 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JJF91_RS08885 (JJF91_08835) tsuA 1847726..1848784 (+) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  JJF91_RS08890 (JJF91_08840) tsuB 1848798..1849025 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JJF91_RS08895 (JJF91_08845) sbcB 1849068..1850492 (-) 1425 WP_032329337.1 exodeoxyribonuclease I Machinery gene
  JJF91_RS08900 (JJF91_08850) - 1850674..1851852 (+) 1179 WP_097451079.1 site-specific integrase -
  JJF91_RS08905 (JJF91_08855) - 1851833..1852024 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  JJF91_RS08910 (JJF91_08860) - 1852129..1852308 (-) 180 WP_001277767.1 Eag protein -
  JJF91_RS08915 (JJF91_08865) - 1852405..1853220 (-) 816 WP_216778005.1 DUF551 domain-containing protein -
  JJF91_RS08920 (JJF91_08870) - 1853225..1853677 (-) 453 WP_087604793.1 ead/Ea22-like family protein -
  JJF91_RS08925 (JJF91_08875) - 1853674..1853841 (-) 168 WP_001214453.1 DUF2737 family protein -
  JJF91_RS08930 (JJF91_08880) - 1853858..1854172 (-) 315 WP_000753555.1 hypothetical protein -
  JJF91_RS08935 (JJF91_08885) - 1854184..1854666 (-) 483 WP_104211458.1 siphovirus Gp157 family protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54400.63 Da        Isoelectric Point: 5.3498

>NTDB_id=458043 JJF91_RS08895 WP_032329337.1 1849068..1850492(-) (sbcB) [Escherichia coli strain XJW9B263]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
ATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQIFTSEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=458043 JJF91_RS08895 WP_032329337.1 1849068..1850492(-) (sbcB) [Escherichia coli strain XJW9B263]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGTGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAACAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
AGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAATGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGATCTTCACGTCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(211-471)

Exonuclease (RNase_T)

(12-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584