Detailed information NTG0458030

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JJF91_RS04825
• Genome accession: NZ_CP067399
• Coordinates: 1002967..1003959 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain XJW9B263
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 997967..1008959

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JJF91_RS04795 (JJF91_04760)	ispD	998028..998738 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JJF91_RS04800 (JJF91_04765)	ispF	998738..999217 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JJF91_RS04805 (JJF91_04770)	truD	999214..1000263 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
JJF91_RS04810 (JJF91_04775)	surE	1000244..1001005 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JJF91_RS04815 (JJF91_04780)	pcm	1000999..1001625 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JJF91_RS04820 (JJF91_04785)	nlpD	1001810..1002904 (+)	1095	WP_306433997.1	murein hydrolase activator NlpD	-
JJF91_RS04825 (JJF91_04790)	rpoS	1002967..1003959 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JJF91_RS04830 (JJF91_04795)	ygbN	1004053..1005417 (-)	1365	WP_000104441.1	GntP family transporter	-
JJF91_RS04835 (JJF91_04800)	ygbM	1005506..1006282 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
JJF91_RS04840 (JJF91_04805)	ygbL	1006287..1006925 (-)	639	WP_001278994.1	aldolase	-
JJF91_RS04845 (JJF91_04810)	otnK	1006922..1008184 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=458030 JJF91_RS04825 WP_000081550.1 1002967..1003959(+) (rpoS) [Escherichia coli strain XJW9B263]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=458030 JJF91_RS04825 WP_000081550.1 1002967..1003959(+) (rpoS) [Escherichia coli strain XJW9B263]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715