Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C663_RS12635 Genome accession   NC_020244
Coordinates   2524660..2525787 (-) Length   375 a.a.
NCBI ID   WP_015483467.1    Uniprot ID   -
Organism   Bacillus subtilis XF-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2519660..2530787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C663_RS21350 - 2520173..2520546 (+) 374 Protein_2545 sigma-70 family RNA polymerase sigma factor -
  C663_RS20850 - 2520594..2520719 (-) 126 Protein_2546 recombinase -
  C663_RS20855 - 2520716..2520838 (-) 123 Protein_2547 hypothetical protein -
  C663_RS12610 (C663_2483) yrkL 2521295..2521819 (-) 525 WP_015384155.1 NAD(P)H-dependent oxidoreductase -
  C663_RS12615 (C663_2484) yrkK 2522066..2522542 (-) 477 WP_015483463.1 HXXEE domain-containing protein -
  C663_RS12620 - 2522849..2523268 (+) 420 WP_015483464.1 MarR family transcriptional regulator -
  C663_RS12625 (C663_2485) - 2523289..2523681 (+) 393 WP_041517949.1 rhodanese-like domain-containing protein -
  C663_RS12630 - 2523686..2524111 (+) 426 WP_015483466.1 EVE domain-containing protein -
  C663_RS12635 rapC 2524660..2525787 (-) 1128 WP_015483467.1 Rap family tetratricopeptide repeat protein Regulator
  C663_RS12640 (C663_2488) - 2525973..2527865 (+) 1893 WP_015483468.1 T7SS effector LXG polymorphic toxin -
  C663_RS12645 (C663_2489) cdiI 2527887..2528246 (+) 360 WP_015384160.1 ribonuclease toxin immunity protein CdiI -
  C663_RS12650 (C663_2490) - 2528299..2528603 (+) 305 Protein_2556 tRNA-Val4 -
  C663_RS21775 (C663_2491) - 2528940..2529125 (+) 186 WP_015384162.1 SMI1/KNR4 family protein -
  C663_RS12660 (C663_2492) - 2529371..2530093 (-) 723 WP_015384163.1 NPP1 family protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44180.37 Da        Isoelectric Point: 5.6714

>NTDB_id=45801 C663_RS12635 WP_015483467.1 2524660..2525787(-) (rapC) [Bacillus subtilis XF-1]
MNLVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALELSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLKALYVDAVDQQGVNQTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=45801 C663_RS12635 WP_015483467.1 2524660..2525787(-) (rapC) [Bacillus subtilis XF-1]
GTGAATCTGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCCTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACAACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTATTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCAGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCATTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAGAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAAAGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATCAAACAATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_8)

(259-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(195-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.415

100

0.445
  rapF Bacillus subtilis subsp. subtilis str. 168

39.683

100

0.4