Detailed information NTG0457914

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JJB21_RS19035
• Genome accession: NZ_CP067311
• Coordinates: 3951533..3952525 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 027_SK3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3946533..3957525

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JJB21_RS19005 (JJB21_19000)	ispD	3946594..3947304 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JJB21_RS19010 (JJB21_19005)	ispF	3947304..3947783 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JJB21_RS19015 (JJB21_19010)	truD	3947780..3948829 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
JJB21_RS19020 (JJB21_19015)	surE	3948810..3949571 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JJB21_RS19025 (JJB21_19020)	pcm	3949565..3950191 (+)	627	WP_001723828.1	protein-L-isoaspartate O-methyltransferase	-
JJB21_RS19030 (JJB21_19025)	nlpD	3950376..3951470 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
JJB21_RS19035 (JJB21_19030)	rpoS	3951533..3952525 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JJB21_RS19040 (JJB21_19035)	ygbN	3952619..3953983 (-)	1365	WP_000104429.1	GntP family transporter	-
JJB21_RS19045 (JJB21_19040)	ygbM	3954072..3954848 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
JJB21_RS19050 (JJB21_19045)	ygbL	3954853..3955491 (-)	639	WP_001278994.1	aldolase	-
JJB21_RS19055 (JJB21_19050)	otnK	3955488..3956750 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=457914 JJB21_RS19035 WP_000081550.1 3951533..3952525(+) (rpoS) [Escherichia coli strain 027_SK3]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=457914 JJB21_RS19035 WP_000081550.1 3951533..3952525(+) (rpoS) [Escherichia coli strain 027_SK3]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715