Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV340_RS07650 Genome accession   NZ_CP055883
Coordinates   1605776..1606402 (+) Length   208 a.a.
NCBI ID   WP_181216413.1    Uniprot ID   -
Organism   Enterobacter sp. RHBSTW-00975     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1576171..1611165 1605776..1606402 within 0


Gene organization within MGE regions


Location: 1576171..1611165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV340_RS07520 (HV340_07525) - 1577357..1578127 (+) 771 WP_181216408.1 hypothetical protein -
  HV340_RS07525 (HV340_07530) - 1578167..1579204 (-) 1038 WP_181216409.1 acyltransferase -
  HV340_RS07530 (HV340_07535) - 1579447..1579878 (-) 432 WP_181216410.1 Arc family DNA-binding protein -
  HV340_RS07535 (HV340_07540) - 1580004..1580170 (+) 167 Protein_1470 Arc family DNA binding domain-containing protein -
  HV340_RS07540 (HV340_07545) - 1580294..1580859 (+) 566 Protein_1471 P22AR C-terminal domain-containing protein -
  HV340_RS24620 (HV340_07550) - 1580928..1581650 (+) 723 Protein_1472 ORF6N domain-containing protein -
  HV340_RS24330 - 1581858..1582246 (+) 389 Protein_1473 S24 family peptidase -
  HV340_RS07550 (HV340_07555) pepN 1582515..1585127 (+) 2613 WP_181216411.1 aminopeptidase N -
  HV340_RS07555 (HV340_07560) ssuB 1585171..1585941 (-) 771 WP_181216412.1 aliphatic sulfonates ABC transporter ATP-binding protein -
  HV340_RS07560 (HV340_07565) ssuC 1585938..1586729 (-) 792 WP_044866350.1 aliphatic sulfonate ABC transporter permease SsuC -
  HV340_RS07565 (HV340_07570) ssuD 1586739..1587884 (-) 1146 WP_113656735.1 FMNH2-dependent alkanesulfonate monooxygenase -
  HV340_RS07570 (HV340_07575) - 1587881..1588843 (-) 963 WP_020884802.1 sulfonate ABC transporter substrate-binding protein -
  HV340_RS07575 (HV340_07580) ssuE 1588836..1589411 (-) 576 WP_032681324.1 NADPH-dependent FMN reductase -
  HV340_RS07580 (HV340_07585) pyrD 1589660..1590670 (+) 1011 WP_020884800.1 quinone-dependent dihydroorotate dehydrogenase -
  HV340_RS07585 (HV340_07590) zapC 1590836..1591378 (+) 543 WP_014169420.1 cell division protein ZapC -
  HV340_RS07590 (HV340_07595) - 1591375..1592484 (-) 1110 WP_025204540.1 YcbX family protein -
  HV340_RS07595 (HV340_07600) rlmKL 1592583..1594691 (+) 2109 WP_032677814.1 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL -
  HV340_RS07600 (HV340_07605) - 1594704..1596611 (+) 1908 WP_063925138.1 ABC transporter ATP-binding protein -
  HV340_RS07605 (HV340_07610) pqiA 1596625..1597878 (+) 1254 WP_063925137.1 membrane integrity-associated transporter subunit PqiA -
  HV340_RS07610 (HV340_07615) pqiB 1597883..1599523 (+) 1641 WP_020884796.1 intermembrane transport protein PqiB -
  HV340_RS07615 (HV340_07620) pqiC 1599520..1600086 (+) 567 WP_025204538.1 membrane integrity-associated transporter subunit PqiC -
  HV340_RS07620 (HV340_07625) rmf 1600343..1600510 (+) 168 WP_013097261.1 ribosome modulation factor -
  HV340_RS07625 (HV340_07630) fabA 1600583..1601101 (-) 519 WP_014169427.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  HV340_RS07630 (HV340_07635) - 1601170..1602930 (-) 1761 WP_063925136.1 Lon protease family protein -
  HV340_RS07635 (HV340_07640) matP 1603117..1603569 (+) 453 WP_014169429.1 macrodomain Ter protein MatP -
  HV340_RS07640 (HV340_07645) ompA 1603639..1604694 (-) 1056 WP_020884794.1 porin OmpA -
  HV340_RS07645 (HV340_07650) sulA 1605049..1605558 (-) 510 WP_032677816.1 SOS-induced cell division inhibitor SulA -
  HV340_RS07650 (HV340_07655) sxy/tfoX 1605776..1606402 (+) 627 WP_181216413.1 TfoX/Sxy family DNA transformation protein Regulator
  HV340_RS07655 (HV340_07660) yccS 1606359..1608521 (-) 2163 WP_063925135.1 YccS family putative transporter -
  HV340_RS07660 (HV340_07665) - 1608541..1608987 (-) 447 WP_014169434.1 YccF domain-containing protein -
  HV340_RS07665 (HV340_07670) helD 1609111..1611165 (+) 2055 WP_063925134.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23890.46 Da        Isoelectric Point: 9.2489

>NTDB_id=457857 HV340_RS07650 WP_181216413.1 1605776..1606402(+) (sxy/tfoX) [Enterobacter sp. RHBSTW-00975]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNALSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITDEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=457857 HV340_RS07650 WP_181216413.1 1605776..1606402(+) (sxy/tfoX) [Enterobacter sp. RHBSTW-00975]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTCGGTGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGACGGGGAGCTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTTATCATTCTTAACCCTGATGAAACGGGGTCGCCCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCGCTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATTACTGATGAAGAGACGCTGCGGGAGCTGGGGGCCCGTGCGAGCTGGCTGAAGATGCGGGCGAAGAAT
AAAGCGCTCAGCATTAAAGTGCTCTTCGCACTGGAAGGGGCCATCGCCGGACTTCATGAAGCGGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.113

97.596

0.577