Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HVY52_RS08820 Genome accession   NZ_CP055675
Coordinates   1857647..1858276 (+) Length   209 a.a.
NCBI ID   WP_000793790.1    Uniprot ID   A0A7L6ZPA1
Organism   Escherichia fergusonii strain RHB28-C13     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1852647..1863276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVY52_RS08800 (HVY52_08800) - 1853054..1854814 (-) 1761 WP_181203352.1 AAA family ATPase -
  HVY52_RS08805 (HVY52_08805) matP 1854999..1855454 (+) 456 WP_000877154.1 macrodomain Ter protein MatP -
  HVY52_RS08810 (HVY52_08810) ompA 1855509..1856564 (-) 1056 WP_024256413.1 porin OmpA -
  HVY52_RS08815 (HVY52_08815) sulA 1856921..1857430 (-) 510 WP_181203353.1 SOS-induced cell division inhibitor SulA -
  HVY52_RS08820 (HVY52_08820) sxy/tfoX 1857647..1858276 (+) 630 WP_000793790.1 TfoX/Sxy family DNA transformation protein Regulator
  HVY52_RS08825 (HVY52_08825) yccS 1858239..1860392 (-) 2154 WP_032243386.1 YccS family putative transporter -
  HVY52_RS08830 (HVY52_08830) - 1860412..1860858 (-) 447 WP_002431615.1 YccF domain-containing protein -
  HVY52_RS08835 (HVY52_08835) helD 1860981..1863035 (+) 2055 WP_181203354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24359.36 Da        Isoelectric Point: 9.5059

>NTDB_id=457840 HVY52_RS08820 WP_000793790.1 1857647..1858276(+) (sxy/tfoX) [Escherichia fergusonii strain RHB28-C13]
MKNLSYDRIYKSQEYLASLGRVNYRSLFGSYSLTISDTVFAMVADGELYLRACEQSVQYCVKHTPRWLTFMKKGRLVMLN
YYRVDESLWQDQQQLIRLSRYSLDAALKEKKSLGRKYRLRDLPNITYHLESLLNEAGIKDVSTLRILGAKMCWLRLKQMN
QHITVKILYLLEGAVQDIHEAALPVVRRQELAVWVESLTPDLALLASFD

Nucleotide


Download         Length: 630 bp        

>NTDB_id=457840 HVY52_RS08820 WP_000793790.1 1857647..1858276(+) (sxy/tfoX) [Escherichia fergusonii strain RHB28-C13]
ATGAAAAATCTATCCTATGATCGGATCTATAAATCACAAGAATATTTAGCATCCCTGGGCAGGGTGAACTATCGGTCTCT
GTTTGGCAGTTACAGCTTAACTATCAGCGATACCGTGTTTGCGATGGTGGCTGATGGTGAGTTATATCTGCGCGCCTGTG
AACAAAGCGTCCAGTATTGCGTCAAACATACCCCCCGCTGGTTAACGTTTATGAAAAAAGGGCGGTTGGTCATGCTGAAC
TATTACCGGGTAGATGAAAGTTTGTGGCAGGACCAGCAGCAATTAATTCGCCTGTCGCGTTATTCGCTGGATGCAGCTCT
TAAAGAGAAGAAGAGCCTTGGCAGGAAGTATCGCTTAAGAGATCTGCCTAACATTACTTATCATCTTGAGTCGTTGCTCA
ATGAGGCGGGTATTAAAGATGTCAGCACGTTGCGTATTTTGGGGGCAAAAATGTGCTGGTTAAGGTTAAAGCAGATGAAT
CAGCACATTACCGTGAAAATACTCTATTTGCTGGAAGGCGCGGTGCAGGATATTCATGAAGCAGCGCTCCCGGTGGTCCG
TCGCCAGGAGCTTGCTGTATGGGTGGAGTCTCTTACGCCAGATCTGGCGTTGCTGGCGTCATTTGATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L6ZPA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.856

100

0.699