Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV060_RS16105 Genome accession   NZ_CP055588
Coordinates   3263384..3263998 (-) Length   204 a.a.
NCBI ID   WP_046671316.1    Uniprot ID   A0A212I3H2
Organism   Citrobacter freundii strain RHBSTW-00084     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3258384..3268998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV060_RS16090 (HV060_16085) helD 3258608..3260662 (-) 2055 WP_046671317.1 DNA helicase IV -
  HV060_RS16095 (HV060_16090) - 3260788..3261234 (+) 447 WP_003035892.1 YccF domain-containing protein -
  HV060_RS16100 (HV060_16095) yccS 3261253..3263406 (+) 2154 WP_032939270.1 YccS family putative transporter -
  HV060_RS16105 (HV060_16100) sxy/tfoX 3263384..3263998 (-) 615 WP_046671316.1 TfoX/Sxy family DNA transformation protein Regulator
  HV060_RS16110 (HV060_16105) sulA 3264215..3264724 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  HV060_RS16115 (HV060_16110) ompA 3265082..3266128 (+) 1047 WP_003035883.1 porin OmpA -
  HV060_RS16120 (HV060_16115) matP 3266218..3266670 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  HV060_RS16125 (HV060_16120) - 3266856..3268616 (+) 1761 WP_003035878.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23225.68 Da        Isoelectric Point: 9.1901

>NTDB_id=457800 HV060_RS16105 WP_046671316.1 3263384..3263998(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00084]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLKTLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=457800 HV060_RS16105 WP_046671316.1 3263384..3263998(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00084]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGAAGACTCTGCTGA
ATGAAGTTGGCATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A212I3H2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.137

100

0.681