Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV119_RS15475 Genome accession   NZ_CP055551
Coordinates   3316135..3316749 (-) Length   204 a.a.
NCBI ID   WP_043015791.1    Uniprot ID   -
Organism   Citrobacter freundii strain RHBSTW-00200     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3311135..3321749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV119_RS15460 (HV119_15445) helD 3311359..3313413 (-) 2055 WP_172862878.1 DNA helicase IV -
  HV119_RS15465 (HV119_15450) - 3313539..3313985 (+) 447 WP_016152485.1 YccF domain-containing protein -
  HV119_RS15470 (HV119_15455) yccS 3314004..3316157 (+) 2154 WP_043017873.1 YccS family putative transporter -
  HV119_RS15475 (HV119_15460) sxy/tfoX 3316135..3316749 (-) 615 WP_043015791.1 TfoX/Sxy family DNA transformation protein Regulator
  HV119_RS15480 (HV119_15465) sulA 3316966..3317475 (+) 510 WP_043015790.1 SOS-induced cell division inhibitor SulA -
  HV119_RS15485 (HV119_15470) ompA 3317833..3318891 (+) 1059 WP_016156137.1 porin OmpA -
  HV119_RS15490 (HV119_15475) matP 3318987..3319439 (-) 453 WP_043015789.1 macrodomain Ter protein MatP -
  HV119_RS15495 (HV119_15480) - 3319625..3321385 (+) 1761 WP_181230579.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23109.50 Da        Isoelectric Point: 8.9242

>NTDB_id=457754 HV119_RS15475 WP_043015791.1 3316135..3316749(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00200]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVGGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=457754 HV119_RS15475 WP_043015791.1 3316135..3316749(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00200]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAGCGGTGAGTTATATCTGCGCGCCTGTG
AGCAGAGCGCACAGTACTGTGTGAAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCGGTTGTGCTCAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGTTGGTATCGCTATCACGATATTCACTGGATGCAGCCGT
TAAGGAAAAACAGAGCCGCTTTGCACAACATCGTCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ACGAAGCAGGTATTAAGGACGAGGGGACATTGCGATCGCTGGGAGCCCAGATGTGCTGGTTGAAACTGCGGCAGAATAAC
CCGGCGTTGACGGTAAAAATTCTCTATGCCCTTGAAGGGGCGGTCGGCGGAGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.118

100

0.691