Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JJB23_RS19060 Genome accession   NZ_CP067303
Coordinates   3959236..3959913 (+) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain ABW_A32     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3954236..3964913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJB23_RS19025 (JJB23_19020) gspG 3954716..3955153 (+) 438 WP_032258448.1 type II secretion system major pseudopilin GspG -
  JJB23_RS19030 (JJB23_19025) gspH 3955161..3955670 (+) 510 WP_001076046.1 type II secretion system minor pseudopilin GspH -
  JJB23_RS19035 (JJB23_19030) gspI 3955667..3956044 (+) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  JJB23_RS19040 (JJB23_19035) gspJ 3956037..3956624 (+) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  JJB23_RS19045 (JJB23_19040) gspK 3956617..3957600 (+) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  JJB23_RS19050 (JJB23_19045) gspL 3957615..3958778 (+) 1164 WP_001115238.1 type II secretion system protein GspL -
  JJB23_RS19055 (JJB23_19050) gspM 3958775..3959236 (+) 462 WP_001295161.1 type II secretion system protein GspM -
  JJB23_RS19060 (JJB23_19055) pilD 3959236..3959913 (+) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  JJB23_RS19065 (JJB23_19060) bfr 3959942..3960418 (-) 477 WP_000675504.1 bacterioferritin -
  JJB23_RS19070 (JJB23_19065) bfd 3960490..3960684 (-) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  JJB23_RS19075 (JJB23_19070) chiA 3960853..3963546 (-) 2694 WP_000773156.1 bifunctional chitinase/lysozyme -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=457744 JJB23_RS19060 WP_000178161.1 3959236..3959913(+) (pilD) [Escherichia coli strain ABW_A32]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=457744 JJB23_RS19060 WP_000178161.1 3959236..3959913(+) (pilD) [Escherichia coli strain ABW_A32]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378