Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV183_RS08270 Genome accession   NZ_CP055538
Coordinates   1757050..1757664 (+) Length   204 a.a.
NCBI ID   WP_117341734.1    Uniprot ID   A0AAU7GM83
Organism   Citrobacter freundii strain RHBSTW-00398     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1752050..1762664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV183_RS08250 (HV183_08255) - 1752407..1754167 (-) 1761 WP_115258918.1 Lon protease family protein -
  HV183_RS08255 (HV183_08260) matP 1754353..1754805 (+) 453 WP_096757641.1 macrodomain Ter protein MatP -
  HV183_RS08260 (HV183_08265) ompA 1754904..1755968 (-) 1065 WP_181219332.1 porin OmpA -
  HV183_RS08265 (HV183_08270) sulA 1756324..1756833 (-) 510 WP_096757640.1 SOS-induced cell division inhibitor SulA -
  HV183_RS08270 (HV183_08275) sxy/tfoX 1757050..1757664 (+) 615 WP_117341734.1 TfoX/Sxy family DNA transformation protein Regulator
  HV183_RS08275 (HV183_08280) yccS 1757642..1759795 (-) 2154 WP_096759437.1 YccS family putative transporter -
  HV183_RS08280 (HV183_08285) - 1759814..1760260 (-) 447 WP_096757638.1 YccF domain-containing protein -
  HV183_RS08285 (HV183_08290) helD 1760386..1762440 (+) 2055 WP_181219334.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23257.84 Da        Isoelectric Point: 9.1904

>NTDB_id=457723 HV183_RS08270 WP_117341734.1 1757050..1757664(+) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00398]
MKNLSYARIYKSQEYLASLGTISYRSLFGSYSLTVGDTVFAMVADGELYLRACEQSVQYCVKHSPVWLTFMKRGRPVILN
YYQVNDALWRNHPQLVSLSRYSLDAAVKEKQTRVSQHRLRELPNISFHLETLLSEAGINDESTLRTLGAQMCWLKLLQIN
PSLTVKILYALEGAISGIHEAALPTVRRRELVEWVSSLKPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=457723 HV183_RS08270 WP_117341734.1 1757050..1757664(+) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00398]
ATGAAAAACCTCTCTTATGCCAGGATCTATAAATCACAAGAATATTTGGCCTCTTTAGGTACAATTAGCTACCGCTCTTT
ATTTGGCAGTTATAGCCTGACGGTGGGCGATACGGTCTTTGCAATGGTTGCCGACGGTGAGTTATACCTGCGGGCCTGTG
AGCAAAGCGTACAGTACTGTGTCAAACATTCCCCGGTCTGGTTGACGTTTATGAAGCGGGGACGTCCCGTGATACTCAAC
TATTATCAAGTTAATGATGCGCTGTGGCGAAACCATCCGCAGTTGGTGTCTTTATCACGATATTCGCTGGATGCCGCAGT
AAAAGAAAAGCAGACGCGTGTTTCGCAACACCGGTTACGGGAACTGCCGAACATTTCCTTTCATCTGGAGACCCTACTGA
GTGAAGCCGGGATTAACGATGAGAGTACATTACGCACCCTGGGTGCTCAAATGTGTTGGCTAAAGCTTTTGCAAATTAAC
CCATCGCTGACAGTGAAAATTCTTTATGCGCTTGAGGGTGCAATCAGTGGGATACATGAAGCTGCACTCCCGACGGTTCG
CCGCCGGGAGTTGGTTGAGTGGGTGAGTTCACTTAAGCCTGAACCGGGTTACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.608

100

0.696