Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JJB23_RS12570 Genome accession   NZ_CP067303
Coordinates   2593304..2594731 (+) Length   475 a.a.
NCBI ID   WP_000980615.1    Uniprot ID   -
Organism   Escherichia coli strain ABW_A32     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2588304..2599731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJB23_RS12540 (JJB23_12535) - 2588471..2588842 (+) 372 WP_001295631.1 IS110 family transposase -
  JJB23_RS23490 - 2589113..2589478 (+) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  JJB23_RS12550 (JJB23_12545) tmaR 2589579..2589908 (-) 330 WP_000450409.1 DUF496 family protein -
  JJB23_RS12555 (JJB23_12550) yeeA 2590080..2591138 (-) 1059 WP_001200892.1 FUSC family protein -
  JJB23_RS12560 (JJB23_12555) sbmC 2591337..2591810 (-) 474 WP_001105385.1 DNA gyrase inhibitor SbmC -
  JJB23_RS12565 (JJB23_12560) dacD 2591929..2593095 (-) 1167 WP_001352246.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JJB23_RS12570 (JJB23_12565) sbcB 2593304..2594731 (+) 1428 WP_000980615.1 exodeoxyribonuclease I Machinery gene
  JJB23_RS12575 (JJB23_12570) tsuB 2594774..2595001 (-) 228 WP_000985272.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JJB23_RS12580 (JJB23_12575) tsuA 2595015..2596073 (-) 1059 WP_001759318.1 thiosulfate utilization transporter TsuA/YeeE -
  JJB23_RS12585 (JJB23_12580) plaP 2596252..2597610 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JJB23_RS12590 (JJB23_12585) yoeI 2597600..2597662 (-) 63 WP_010723108.1 membrane protein YoeI -
  JJB23_RS12595 (JJB23_12590) yeeY 2597877..2598806 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  JJB23_RS12600 (JJB23_12595) yeeZ 2598852..2599676 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54444.71 Da        Isoelectric Point: 5.4700

>NTDB_id=457721 JJB23_RS12570 WP_000980615.1 2593304..2594731(+) (sbcB) [Escherichia coli strain ABW_A32]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLSGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=457721 JJB23_RS12570 WP_000980615.1 2593304..2594731(+) (sbcB) [Escherichia coli strain ABW_A32]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGTCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583