Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   C663_RS09030 Genome accession   NC_020244
Coordinates   1773594..1774025 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis XF-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1768594..1779025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C663_RS09010 (C663_1741) spoVS 1769156..1769416 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  C663_RS09015 (C663_1742) tdh 1769681..1770724 (+) 1044 WP_015483237.1 L-threonine 3-dehydrogenase -
  C663_RS09020 (C663_1743) kbl 1770737..1771915 (+) 1179 WP_015383694.1 glycine C-acetyltransferase -
  C663_RS09025 (C663_1744) miaB 1772063..1773592 (+) 1530 WP_015483238.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  C663_RS09030 (C663_1745) ymcA 1773594..1774025 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  C663_RS09035 (C663_1746) cotE 1774287..1774832 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  C663_RS09040 (C663_1747) hexA 1774965..1777541 (+) 2577 WP_015383696.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=45772 C663_RS09030 WP_003231834.1 1773594..1774025(+) (ymcA) [Bacillus subtilis XF-1]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=45772 C663_RS09030 WP_003231834.1 1773594..1774025(+) (ymcA) [Bacillus subtilis XF-1]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment