Detailed information NTG0457655

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JJB24_RS16335
• Genome accession: NZ_CP067299
• Coordinates: 3406060..3407052 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ABW_A33
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3401060..3412052

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JJB24_RS16315 (JJB24_16310)	otnK	3401835..3403097 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
JJB24_RS16320 (JJB24_16315)	ygbL	3403094..3403732 (+)	639	WP_001278994.1	aldolase	-
JJB24_RS16325 (JJB24_16320)	ygbM	3403737..3404513 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
JJB24_RS16330 (JJB24_16325)	ygbN	3404602..3405966 (+)	1365	WP_000104441.1	GntP family transporter	-
JJB24_RS16335 (JJB24_16330)	rpoS	3406060..3407052 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JJB24_RS16340 (JJB24_16335)	nlpD	3407115..3408209 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
JJB24_RS16345 (JJB24_16340)	pcm	3408394..3409020 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JJB24_RS16350 (JJB24_16345)	surE	3409014..3409775 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JJB24_RS16355 (JJB24_16350)	truD	3409756..3410805 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
JJB24_RS16360 (JJB24_16355)	ispF	3410802..3411281 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JJB24_RS16365 (JJB24_16360)	ispD	3411281..3411991 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=457655 JJB24_RS16335 WP_000081550.1 3406060..3407052(-) (rpoS) [Escherichia coli strain ABW_A33]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=457655 JJB24_RS16335 WP_000081550.1 3406060..3407052(-) (rpoS) [Escherichia coli strain ABW_A33]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715