Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV334_RS15510 Genome accession   NZ_CP055418
Coordinates   3201165..3201779 (-) Length   204 a.a.
NCBI ID   WP_047501141.1    Uniprot ID   A0A5A9DFT6
Organism   Citrobacter sp. RHBSTW-00944     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3196165..3206779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV334_RS15495 (HV334_15530) helD 3196389..3198443 (-) 2055 WP_181220588.1 DNA helicase IV -
  HV334_RS15500 (HV334_15535) - 3198569..3199015 (+) 447 WP_181220589.1 YccF domain-containing protein -
  HV334_RS15505 (HV334_15540) yccS 3199034..3201187 (+) 2154 WP_181220590.1 YccS family putative transporter -
  HV334_RS15510 (HV334_15545) sxy/tfoX 3201165..3201779 (-) 615 WP_047501141.1 TfoX/Sxy family DNA transformation protein Regulator
  HV334_RS15515 (HV334_15550) sulA 3201996..3202505 (+) 510 WP_032931135.1 SOS-induced cell division inhibitor SulA -
  HV334_RS15520 (HV334_15555) ompA 3202863..3203921 (+) 1059 WP_181220591.1 porin OmpA -
  HV334_RS15525 (HV334_15560) matP 3204019..3204471 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  HV334_RS15530 (HV334_15565) - 3204657..3206417 (+) 1761 WP_181220592.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23198.55 Da        Isoelectric Point: 8.6113

>NTDB_id=457637 HV334_RS15510 WP_047501141.1 3201165..3201779(-) (sxy/tfoX) [Citrobacter sp. RHBSTW-00944]
MKEKSYARIYKSQEYLASLGTIHYRSLFGSYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=457637 HV334_RS15510 WP_047501141.1 3201165..3201779(-) (sxy/tfoX) [Citrobacter sp. RHBSTW-00944]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCAGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTGTCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9DFT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.652

98.529

0.686