Detailed information NTG0457594

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JJB13_RS19145
• Genome accession: NZ_CP067265
• Coordinates: 3968016..3969008 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ABW_S38
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3963016..3974008

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JJB13_RS19115 (JJB13_19110)	ispD	3963077..3963787 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JJB13_RS19120 (JJB13_19115)	ispF	3963787..3964266 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JJB13_RS19125 (JJB13_19120)	truD	3964263..3965312 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
JJB13_RS19130 (JJB13_19125)	surE	3965293..3966054 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JJB13_RS19135 (JJB13_19130)	pcm	3966048..3966674 (+)	627	WP_001723828.1	protein-L-isoaspartate O-methyltransferase	-
JJB13_RS19140 (JJB13_19135)	nlpD	3966859..3967953 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
JJB13_RS19145 (JJB13_19140)	rpoS	3968016..3969008 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JJB13_RS19150 (JJB13_19145)	ygbN	3969102..3970466 (-)	1365	WP_000104429.1	GntP family transporter	-
JJB13_RS19155 (JJB13_19150)	ygbM	3970555..3971331 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
JJB13_RS19160 (JJB13_19155)	ygbL	3971336..3971974 (-)	639	WP_001278994.1	aldolase	-
JJB13_RS19165 (JJB13_19160)	otnK	3971971..3973233 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=457594 JJB13_RS19145 WP_000081550.1 3968016..3969008(+) (rpoS) [Escherichia coli strain ABW_S38]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=457594 JJB13_RS19145 WP_000081550.1 3968016..3969008(+) (rpoS) [Escherichia coli strain ABW_S38]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715