Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JJB13_RS00520 Genome accession   NZ_CP067265
Coordinates   110550..111977 (-) Length   475 a.a.
NCBI ID   WP_000980539.1    Uniprot ID   -
Organism   Escherichia coli strain ABW_S38     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 105550..116977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJB13_RS00490 (JJB13_00490) yeeZ 105605..106429 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  JJB13_RS00495 (JJB13_00495) yeeY 106475..107404 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  JJB13_RS00500 (JJB13_00500) yoeI 107619..107681 (+) 63 WP_010723108.1 membrane protein YoeI -
  JJB13_RS00505 (JJB13_00505) plaP 107671..109029 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JJB13_RS00510 (JJB13_00510) tsuA 109208..110266 (+) 1059 WP_000492306.1 thiosulfate utilization transporter TsuA/YeeE -
  JJB13_RS00515 (JJB13_00515) tsuB 110280..110507 (+) 228 WP_001723627.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JJB13_RS00520 (JJB13_00520) sbcB 110550..111977 (-) 1428 WP_000980539.1 exodeoxyribonuclease I Machinery gene
  JJB13_RS00525 (JJB13_00525) dacD 112186..113352 (+) 1167 Protein_105 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JJB13_RS00530 (JJB13_00530) sbmC 113471..113944 (+) 474 WP_001723624.1 DNA gyrase inhibitor SbmC -
  JJB13_RS00535 (JJB13_00535) yeeA 114142..115200 (+) 1059 WP_001200892.1 FUSC family protein -
  JJB13_RS00540 (JJB13_00540) tmaR 115372..115701 (+) 330 WP_000450409.1 DUF496 family protein -
  JJB13_RS00545 (JJB13_00545) - 115802..115984 (-) 183 WP_024167529.1 EutP/PduV family microcompartment system protein -
  JJB13_RS00550 (JJB13_00550) - 116438..116809 (-) 372 WP_001295631.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.3498

>NTDB_id=457527 JJB13_RS00520 WP_000980539.1 110550..111977(-) (sbcB) [Escherichia coli strain ABW_S38]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=457527 JJB13_RS00520 WP_000980539.1 110550..111977(-) (sbcB) [Escherichia coli strain ABW_S38]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581