Detailed information NTG0457433

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JJB17_RS19895
• Genome accession: NZ_CP067245
• Coordinates: 4128790..4129782 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain OW1E2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4123790..4134782

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JJB17_RS19865 (JJB17_19860)	ispD	4123851..4124561 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JJB17_RS19870 (JJB17_19865)	ispF	4124561..4125040 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JJB17_RS19875 (JJB17_19870)	truD	4125037..4126086 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
JJB17_RS19880 (JJB17_19875)	surE	4126067..4126828 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JJB17_RS19885 (JJB17_19880)	pcm	4126822..4127448 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JJB17_RS19890 (JJB17_19885)	nlpD	4127633..4128727 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
JJB17_RS19895 (JJB17_19890)	rpoS	4128790..4129782 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JJB17_RS19900 (JJB17_19895)	ygbN	4129876..4131240 (-)	1365	WP_000104441.1	GntP family transporter	-
JJB17_RS19905 (JJB17_19900)	ygbM	4131329..4132105 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
JJB17_RS19910 (JJB17_19905)	ygbL	4132110..4132748 (-)	639	WP_001278994.1	aldolase	-
JJB17_RS19915 (JJB17_19910)	otnK	4132745..4134007 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=457433 JJB17_RS19895 WP_000081550.1 4128790..4129782(+) (rpoS) [Escherichia coli strain OW1E2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=457433 JJB17_RS19895 WP_000081550.1 4128790..4129782(+) (rpoS) [Escherichia coli strain OW1E2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715