Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUX90_RS01290 Genome accession   NZ_CP055292
Coordinates   224588..225217 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella sonnei strain SE6-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 219588..230217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUX90_RS01275 (HUX90_01275) helD 219830..221884 (-) 2055 WP_001315388.1 DNA helicase IV -
  HUX90_RS01280 (HUX90_01280) - 222007..222453 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HUX90_RS01285 (HUX90_01285) yccS 222463..224625 (+) 2163 WP_000875044.1 YccS family putative transporter -
  HUX90_RS01290 (HUX90_01290) sxy/tfoX 224588..225217 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HUX90_RS01295 (HUX90_01295) sulA 225436..225945 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HUX90_RS01300 (HUX90_01300) ompA 226302..227354 (+) 1053 WP_000750419.1 porin OmpA -
  HUX90_RS01305 (HUX90_01305) matP 227429..227881 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  HUX90_RS01310 (HUX90_01310) - 228067..229827 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=457396 HUX90_RS01290 WP_000839153.1 224588..225217(-) (sxy/tfoX) [Shigella sonnei strain SE6-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=457396 HUX90_RS01290 WP_000839153.1 224588..225217(-) (sxy/tfoX) [Shigella sonnei strain SE6-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1