Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   HUK62_RS16420 Genome accession   NZ_CP055277
Coordinates   3369302..3369829 (-) Length   175 a.a.
NCBI ID   WP_005401352.1    Uniprot ID   A0A7H8SJL4
Organism   Acinetobacter sp. NEB 394     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 3367530..3368480 3369302..3369829 flank 822


Gene organization within MGE regions


Location: 3367530..3369829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK62_RS16410 (HUK62_16410) - 3367530..3368480 (+) 951 WP_006582413.1 IS481 family transposase -
  HUK62_RS16415 (HUK62_16415) - 3368491..3369237 (-) 747 Protein_3195 AMIN domain-containing protein -
  HUK62_RS16420 (HUK62_16420) pilP 3369302..3369829 (-) 528 WP_005401352.1 pilus assembly protein PilP Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19359.58 Da        Isoelectric Point: 7.2428

>NTDB_id=457392 HUK62_RS16420 WP_005401352.1 3369302..3369829(-) (pilP) [Acinetobacter sp. NEB 394]
MKHQNLLLSLCVGLFLVGCDSRIDAVNMQMAEIRNQPPLPIEPAPDFPPVPTFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYLNLSRQLQPLESYAIESLNMKGSMRGQNGQILALIQTPDGEIERVQRGSYLGMNHGRVINITATQIDLIEIILDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=457392 HUK62_RS16420 WP_005401352.1 3369302..3369829(-) (pilP) [Acinetobacter sp. NEB 394]
ATGAAACATCAAAACCTCTTACTTAGTCTCTGCGTAGGACTATTCCTTGTCGGTTGTGATTCACGTATTGATGCGGTCAA
TATGCAAATGGCTGAAATTCGCAATCAGCCACCATTGCCGATTGAGCCAGCGCCAGATTTCCCACCTGTACCGACCTTTA
ACTATGCTGCGCACCAATTAAAGAGCCCGTTTATGCCAAGCTCTTTAGCGGCTGAACTGAAGATTATGGCTGGAAAGCGT
GTCTATCTAAACCTATCGCGCCAATTACAACCCTTGGAAAGTTATGCGATTGAATCGCTTAACATGAAAGGAAGCATGCG
CGGACAAAATGGACAAATTTTGGCGTTGATTCAAACACCGGATGGTGAAATTGAACGCGTGCAGCGTGGTAGTTATTTGG
GGATGAATCATGGTCGTGTGATTAATATCACCGCTACACAAATTGATTTGATTGAAATTATTCTGGATGGGCGTGAGGGC
TATGTCGAGCGCCCGAGAAGCCTAGTATTAATTGGGCCGGCGCCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(29-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SJL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

76

100

0.76
  comL Acinetobacter baylyi ADP1

70.286

100

0.703