Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   HUK62_RS05935 Genome accession   NZ_CP055277
Coordinates   1261964..1266421 (+) Length   1485 a.a.
NCBI ID   WP_176537358.1    Uniprot ID   A0A7H8SEK9
Organism   Acinetobacter sp. NEB 394     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 1256964..1271421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK62_RS05910 (HUK62_05910) - 1257215..1258243 (+) 1029 WP_176536921.1 transposase -
  HUK62_RS05915 (HUK62_05915) pilG 1258354..1258737 (+) 384 WP_004694493.1 twitching motility response regulator PilG Regulator
  HUK62_RS05920 (HUK62_05920) - 1258765..1259133 (+) 369 WP_004694491.1 response regulator -
  HUK62_RS05925 (HUK62_05925) - 1259139..1259675 (+) 537 WP_004694490.1 chemotaxis protein CheW -
  HUK62_RS05930 (HUK62_05930) - 1259726..1261798 (+) 2073 WP_004981158.1 methyl-accepting chemotaxis protein -
  HUK62_RS05935 (HUK62_05935) chpA 1261964..1266421 (+) 4458 WP_176537358.1 Hpt domain-containing protein Regulator
  HUK62_RS05940 (HUK62_05940) - 1266426..1266881 (+) 456 WP_058952133.1 hypothetical protein -
  HUK62_RS05945 (HUK62_05945) dapE 1266947..1268080 (-) 1134 WP_176537359.1 succinyl-diaminopimelate desuccinylase -
  HUK62_RS05950 (HUK62_05950) - 1268197..1268343 (-) 147 WP_126035781.1 entericidin A/B family lipoprotein -
  HUK62_RS05955 (HUK62_05955) - 1268500..1269378 (-) 879 WP_176537360.1 DUF1853 family protein -
  HUK62_RS05960 (HUK62_05960) - 1269476..1269868 (+) 393 WP_148826485.1 YbaN family protein -
  HUK62_RS05965 (HUK62_05965) elsL 1269868..1270371 (+) 504 WP_078425403.1 cell wall-recycling L,D-carboxypeptidase ElsL -

Sequence


Protein


Download         Length: 1485 a.a.        Molecular weight: 166028.41 Da        Isoelectric Point: 4.4150

>NTDB_id=457379 HUK62_RS05935 WP_176537358.1 1261964..1266421(+) (chpA) [Acinetobacter sp. NEB 394]
MKEILKHLVETTTLPEDSYLDQDAEILEIFVEEIEEIFVDLDPLFEKWYAEPTHQETLLSIRRHFHTLKGSGRMVGAKSA
GETAWAVEDTLNRVISGAVPLTATVQKFAKTVFKLYQFKLYPIFKAVQEIDLDLRPLVLIGQQLQQNQSLEPALEELLQL
SNHLNSNDVVTGLELRDIEVAESEPQVADASEQNDQVHDVLEETLAIFIEEAEDHLATIDQFLNADETKVQDYNSLIRAL
HTLRGSSSMAQIEHVFNASSKVENLFKTLVQEEIVSTSKEISLLTQYAEFVRDYLHVLGRGTNEQLDVIYATFTTAWDNY
GFSIEDVDDELNPQGMVSKLIELNIDLLLDAEFEFDQRAKVEYPEYIQHLGEQAKQLLEFTNNRAAQGIHDFTSELYAGY
QALLEKPELLNVDYAYELFGQAHQEFIHLFDTLAAGQRVILTEEVHKVLNELMAFVQQDVESTSTTVTEPVAEAIVSRNT
LQPSLDLAQISQQIASDHQYKQSNTANTDFDDDLLDIFLEEAEELLMGMDQDLNTWSKNGNDTAALNNLMRYLHTLKGGA
NMISAPFIGSIAHELESIYERVIRQQIATTPQLISIIRLVQDDVADRIQVIRTEKVDYPATATINVLHNIQSLVEGTPVT
TTASEPLVEAFVAAVEEPLSNVDRTIEAEAASVESAPAIESSSVVDNTDVTVVEQLDTPSLVQEEAASLLSIVEETFLEE
AEEILATTDGLLKQWTEQRSDRSVLLQLQRAAHSLKGGARMAENEPVGAIAYELETTFEQFAVHNFSSNVYDPLLQTAFE
WLKQAIFKRDFSNYDGLKNSLASIDYVDVIAQLPTRVTQIDLLNAVPSFEFVQGDGTEPPAMLGEWKETTHLDGGNEMIR
ISADLVEKMIDLSGENAINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIAKHGSENSRYADFDPLEMDQ
YSSLNQLSKSLAESASDLVDFKSTLAEKIRDAEGLLLQQSRIQAEIQESLMRTRLVPFSRMLPRLQRIVRQTASTLNRPT
ELVVHNTEGELDRTILERLVTPFEHMLRNAIDHGIEDTEQRSAAKKSATGQIELNISRQGTDVIVSFKDDGKGIDESTIK
AKALNLGLIKADQVLDKQEILQFIFHPGFSTAKEVTQISGRGVGLDVVQSEIKALGGHVTVESEIGFGTTFIIRVPTTVA
VSDALMVKAGDQQYAIPLAQIDRIVRIAPTALDHYFHSKDDQFKIDGVSYKLRYLSEFLSNQPIPRLSNIGHSLPVLLIK
GNSGQTIALLVDQLIGSRAQIVVKPVGQQFASIGAIAGATILGDGHVCLILDGQNIARQILSTKRVTHAADHRDFGRHQD
TRRLVMIVDDSVTVRKVTSRLLERQGFDIVTAKDGVDAMEQLESVKPDLMLLDIEMPRMDGFEVTNLVRHHEIHQNLPII
MITSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIQQLLAEKQG

Nucleotide


Download         Length: 4458 bp        

>NTDB_id=457379 HUK62_RS05935 WP_176537358.1 1261964..1266421(+) (chpA) [Acinetobacter sp. NEB 394]
ATGAAAGAAATATTAAAACATTTAGTTGAAACGACAACGCTTCCGGAAGATAGTTATCTAGATCAAGATGCAGAAATTCT
TGAAATTTTTGTTGAAGAAATTGAAGAAATCTTCGTTGACTTAGATCCATTATTTGAAAAGTGGTACGCTGAACCGACCC
ATCAAGAAACTTTGTTGAGCATACGTCGTCACTTCCATACCTTAAAAGGCTCTGGTCGTATGGTGGGGGCAAAGTCAGCA
GGTGAAACAGCATGGGCGGTTGAAGATACCTTAAATCGTGTGATTTCAGGGGCTGTGCCTCTCACGGCAACGGTTCAAAA
ATTCGCTAAAACAGTATTCAAACTGTATCAATTTAAACTGTATCCGATATTCAAAGCGGTGCAGGAAATTGATCTTGATC
TTCGTCCATTGGTTTTAATTGGACAACAATTACAACAAAATCAAAGTTTAGAACCTGCTCTAGAAGAGTTGCTACAACTG
TCTAATCATCTAAATAGTAATGATGTCGTGACGGGATTAGAGCTGAGAGATATCGAAGTGGCTGAATCTGAGCCGCAAGT
TGCAGACGCATCTGAACAGAATGATCAAGTACATGATGTCCTTGAAGAAACTTTAGCGATCTTCATTGAAGAAGCGGAAG
ACCATTTAGCGACTATCGATCAGTTCTTAAATGCGGATGAAACCAAAGTACAAGATTACAATAGTTTAATCCGTGCTTTA
CATACATTGCGTGGTAGTTCGTCTATGGCGCAAATTGAGCATGTTTTTAATGCCAGCTCAAAAGTCGAAAATCTATTTAA
AACCTTGGTTCAAGAAGAGATCGTTTCTACCTCGAAGGAAATCTCTTTACTCACCCAATATGCTGAATTTGTACGTGATT
ATTTACATGTGCTTGGGCGTGGTACGAACGAACAGCTTGACGTGATTTACGCCACGTTCACTACGGCTTGGGATAACTAT
GGTTTCAGTATTGAAGACGTAGATGATGAGCTAAACCCACAAGGTATGGTCTCGAAGCTGATCGAGTTAAATATTGATCT
GTTGCTTGATGCCGAGTTTGAGTTTGATCAGCGTGCTAAGGTTGAATATCCTGAATATATTCAGCACTTAGGTGAACAAG
CAAAACAATTGCTAGAATTCACCAATAACCGTGCTGCTCAAGGAATTCATGACTTTACTTCTGAGCTATATGCTGGTTAT
CAAGCCTTACTGGAAAAGCCAGAATTACTCAATGTAGATTATGCATACGAGTTATTTGGTCAGGCACATCAAGAATTTAT
CCATTTATTTGACACTTTAGCTGCGGGTCAGCGCGTCATTCTGACTGAAGAAGTGCATAAAGTTCTGAATGAATTAATGG
CCTTCGTACAGCAAGATGTTGAATCGACTTCGACGACGGTAACTGAACCTGTTGCTGAGGCTATTGTTTCTAGAAATACT
TTACAACCAAGCCTTGATCTTGCGCAGATTTCGCAGCAAATTGCATCGGATCATCAGTACAAGCAATCGAATACGGCCAA
TACCGATTTTGATGATGATTTGCTCGATATCTTCTTGGAAGAAGCCGAAGAATTATTGATGGGGATGGATCAGGATCTCA
ATACTTGGTCTAAAAATGGCAATGATACCGCGGCACTCAATAATTTAATGCGTTATTTGCACACCTTAAAAGGTGGTGCC
AATATGATTTCTGCACCTTTTATTGGTTCGATTGCACACGAATTAGAGTCTATTTATGAGCGTGTGATTCGTCAGCAAAT
AGCCACAACGCCACAGTTGATCAGCATCATTCGCTTAGTACAGGATGACGTCGCAGACCGAATTCAGGTTATTCGTACGG
AGAAGGTTGATTATCCAGCAACAGCGACCATCAATGTACTGCATAACATTCAGAGCCTGGTTGAGGGTACGCCTGTTACA
ACTACAGCATCTGAGCCTTTAGTTGAAGCGTTTGTTGCGGCAGTTGAAGAACCTTTATCTAATGTAGATAGAACGATTGA
AGCTGAGGCAGCTTCGGTTGAGTCAGCACCTGCGATTGAATCGTCGAGTGTAGTTGATAACACGGACGTTACTGTCGTTG
AACAGCTGGATACTCCGTCACTTGTCCAAGAAGAAGCAGCCAGTCTTTTATCAATTGTTGAAGAAACCTTCTTGGAAGAA
GCCGAAGAAATTTTAGCGACTACGGATGGCTTACTGAAACAGTGGACTGAGCAACGTAGTGACCGTAGTGTGTTACTACA
ATTGCAACGTGCCGCGCACAGCTTAAAAGGCGGCGCGCGTATGGCGGAGAATGAACCCGTTGGTGCGATTGCTTATGAGC
TAGAAACTACATTTGAGCAATTTGCTGTACATAATTTTAGTTCAAACGTATATGACCCATTATTGCAAACCGCGTTTGAA
TGGTTAAAACAAGCCATCTTCAAACGTGATTTTAGTAATTATGATGGTCTGAAAAATAGCTTAGCATCTATTGATTATGT
GGATGTGATTGCGCAATTACCGACGCGTGTAACTCAAATTGATTTACTCAATGCGGTACCAAGTTTTGAGTTTGTGCAGG
GTGATGGTACTGAGCCGCCAGCAATGCTGGGTGAGTGGAAAGAAACGACTCACTTGGATGGCGGTAATGAGATGATCCGT
ATCTCAGCTGATTTGGTTGAGAAAATGATCGACCTGTCAGGTGAAAATGCGATTAACCGTTCGCGTATCGAGATGGATTT
AGGTCAACTCGGCAATACGTTGAACGAGATGGAGCTTGCAATTAAGCGTTTGGCGGATCAGTTACGTCGAATGGAAGGAG
AGCTTGAAAGTCAAATTATTGCGAAGCACGGTTCTGAAAACTCGCGCTACGCAGACTTTGACCCCTTGGAGATGGACCAA
TATTCATCGCTCAATCAATTGTCCAAATCCTTAGCCGAATCGGCTTCGGATTTGGTCGACTTCAAGAGCACTTTGGCTGA
AAAAATTCGTGATGCGGAAGGTTTGTTATTACAACAATCCCGCATTCAAGCGGAGATTCAAGAAAGCTTAATGCGGACAC
GTTTGGTGCCGTTCTCACGTATGTTGCCACGTTTGCAGCGTATTGTACGTCAGACCGCATCAACCTTGAACCGTCCAACG
GAATTGGTCGTTCATAACACTGAAGGTGAATTAGACCGTACGATTCTTGAACGTTTGGTAACACCATTTGAGCATATGCT
ACGTAACGCAATCGACCACGGTATTGAAGATACGGAACAACGTAGCGCTGCGAAAAAATCAGCGACAGGCCAAATTGAAC
TAAACATTAGCCGTCAAGGTACAGACGTTATCGTCAGTTTTAAAGATGATGGTAAGGGTATTGATGAAAGCACGATTAAA
GCGAAAGCGCTAAACTTAGGTTTAATTAAAGCCGATCAAGTGCTAGACAAACAAGAAATCTTACAGTTTATTTTCCATCC
GGGTTTCAGTACGGCCAAAGAAGTGACGCAAATTTCTGGACGTGGTGTTGGTCTTGATGTGGTACAAAGTGAAATTAAAG
CACTGGGTGGACATGTCACGGTTGAATCGGAAATTGGATTCGGTACGACCTTCATTATTCGCGTACCGACTACGGTAGCG
GTTAGTGATGCGTTGATGGTGAAAGCCGGTGATCAACAATATGCGATTCCATTAGCGCAGATTGATCGTATTGTGCGTAT
TGCTCCAACAGCACTGGATCACTATTTCCACAGCAAAGATGACCAATTCAAAATCGATGGTGTGAGTTATAAACTGCGGT
ATTTATCTGAGTTTTTATCCAATCAGCCGATTCCACGTTTGAGTAATATTGGACATTCATTGCCAGTGTTGTTGATTAAA
GGCAACAGTGGACAAACCATTGCATTATTGGTTGATCAGCTGATTGGTTCACGTGCGCAAATTGTAGTGAAGCCGGTTGG
ACAACAGTTTGCCAGCATTGGTGCAATTGCGGGTGCAACGATCTTGGGTGATGGCCATGTATGCTTAATTTTAGATGGTC
AGAACATTGCACGTCAGATTTTAAGTACCAAGCGTGTAACGCATGCAGCTGATCATCGTGACTTTGGTCGTCATCAGGAT
ACGCGTCGTTTAGTGATGATTGTGGATGACTCAGTTACGGTTCGTAAGGTCACATCGCGCTTATTAGAGCGTCAAGGCTT
TGATATTGTGACTGCAAAAGATGGTGTCGATGCGATGGAGCAGCTGGAGAGCGTTAAACCAGACTTGATGTTGCTGGATA
TTGAAATGCCACGTATGGATGGTTTTGAAGTAACGAACTTGGTTCGTCACCACGAAATTCACCAGAACTTGCCGATTATT
ATGATTACATCGCGTACGGGTGAAAAACACCGTGAACGTGCTTTCAGCTTGGGCGTGACGCACTACATGGGCAAACCATT
CCAAGAGGCAGAGTTACTTGCCAACATTCAGCAGTTATTGGCTGAAAAGCAGGGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

61.314

100

0.622