Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   HUK62_RS02630 Genome accession   NZ_CP055277
Coordinates   581788..582135 (+) Length   115 a.a.
NCBI ID   WP_171056712.1    Uniprot ID   -
Organism   Acinetobacter sp. NEB 394     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 576788..587135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK62_RS02605 (HUK62_02605) hemC 577475..578395 (+) 921 WP_218015309.1 hydroxymethylbilane synthase -
  HUK62_RS02610 (HUK62_02610) - 578408..579187 (+) 780 WP_176537015.1 uroporphyrinogen-III synthase -
  HUK62_RS02615 (HUK62_02615) - 579184..580026 (+) 843 WP_176537016.1 hypothetical protein -
  HUK62_RS02620 (HUK62_02620) - 580031..581224 (+) 1194 WP_176537017.1 heme biosynthesis protein HemY -
  HUK62_RS02625 (HUK62_02625) - 581232..581660 (+) 429 WP_125273404.1 thioesterase family protein -
  HUK62_RS02630 (HUK62_02630) hns 581788..582135 (+) 348 WP_171056712.1 H-NS histone family protein Regulator
  HUK62_RS02635 (HUK62_02635) gspN 582332..583042 (+) 711 WP_176538435.1 type II secretion system protein N -
  HUK62_RS02640 (HUK62_02640) - 583042..583866 (+) 825 WP_176537018.1 type II secretion system protein N -
  HUK62_RS02645 (HUK62_02645) gspD 583906..586266 (+) 2361 WP_176537019.1 type II secretion system secretin GspD -
  HUK62_RS02650 (HUK62_02650) - 586354..587097 (+) 744 WP_176537020.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12852.75 Da        Isoelectric Point: 9.5383

>NTDB_id=457367 HUK62_RS02630 WP_171056712.1 581788..582135(+) (hns) [Acinetobacter sp. NEB 394]
MLVNGVNVMPDISNLSVEELKRLQIEAEALIASKKDQAIEDAYTQINAIAENVGLSIEQILEFGATKRKKGTRKSVEPRY
RNKGNAAETWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 348 bp        

>NTDB_id=457367 HUK62_RS02630 WP_171056712.1 581788..582135(+) (hns) [Acinetobacter sp. NEB 394]
ATGTTGGTTAATGGAGTTAATGTAATGCCAGATATTAGTAATTTATCCGTAGAAGAGTTAAAGCGTCTACAAATCGAAGC
GGAAGCTTTAATTGCATCTAAAAAAGATCAAGCAATTGAAGATGCTTATACTCAAATTAACGCGATTGCGGAAAATGTAG
GCTTAAGCATTGAACAAATTTTAGAGTTTGGCGCGACCAAGCGTAAAAAAGGCACACGTAAGTCGGTTGAACCGCGTTAC
CGTAACAAAGGCAATGCTGCTGAGACATGGACTGGCCGTGGTAAGCAACCACGTTGGTTGGTGGCTCAGTTAGAAAAAGG
TGCGAAGCTTGAAGATTTTCTAATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(19-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

86.792

92.174

0.8