Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JJB18_RS14495 Genome accession   NZ_CP067241
Coordinates   3076561..3077988 (+) Length   475 a.a.
NCBI ID   WP_000980557.1    Uniprot ID   -
Organism   Escherichia coli strain P19_598     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3071561..3082988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJB18_RS14465 (JJB18_14460) pduU 3071938..3072288 (+) 351 WP_001524968.1 propanediol utilization microcompartment protein PduU -
  JJB18_RS14470 (JJB18_14465) - 3072293..3072736 (+) 444 WP_061092871.1 EutP/PduV family microcompartment system protein -
  JJB18_RS14475 (JJB18_14470) tmaR 3072837..3073166 (-) 330 WP_000450409.1 DUF496 family protein -
  JJB18_RS14480 (JJB18_14475) yeeA 3073338..3074396 (-) 1059 WP_001200890.1 FUSC family protein -
  JJB18_RS14485 (JJB18_14480) sbmC 3074594..3075067 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  JJB18_RS14490 (JJB18_14485) dacD 3075186..3076352 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JJB18_RS14495 (JJB18_14490) sbcB 3076561..3077988 (+) 1428 WP_000980557.1 exodeoxyribonuclease I Machinery gene
  JJB18_RS14500 (JJB18_14495) tsuB 3078031..3078258 (-) 228 WP_061092870.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JJB18_RS14505 (JJB18_14500) tsuA 3078272..3079330 (-) 1059 WP_061092869.1 thiosulfate utilization transporter TsuA/YeeE -
  JJB18_RS14510 (JJB18_14505) plaP 3079509..3080867 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JJB18_RS14515 (JJB18_14510) yoeI 3080857..3080919 (-) 63 WP_010723108.1 membrane protein YoeI -
  JJB18_RS14520 (JJB18_14515) yeeY 3081134..3082063 (-) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  JJB18_RS14525 (JJB18_14520) yeeZ 3082109..3082933 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.73 Da        Isoelectric Point: 5.4700

>NTDB_id=457331 JJB18_RS14495 WP_000980557.1 3076561..3077988(+) (sbcB) [Escherichia coli strain P19_598]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=457331 JJB18_RS14495 WP_000980557.1 3076561..3077988(+) (sbcB) [Escherichia coli strain P19_598]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583