Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HUW50_RS12310 Genome accession   NZ_CP055263
Coordinates   2587971..2588927 (+) Length   318 a.a.
NCBI ID   WP_185653956.1    Uniprot ID   -
Organism   Metabacillus sp. KUDC1714     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2582971..2593927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW50_RS12290 (HUW50_12290) yhbH 2583040..2584215 (+) 1176 WP_066337258.1 sporulation protein YhbH -
  HUW50_RS12295 (HUW50_12295) - 2584437..2585768 (+) 1332 WP_066337256.1 hemolysin family protein -
  HUW50_RS12300 (HUW50_12300) mgrA 2585885..2586877 (+) 993 WP_185653954.1 L-glyceraldehyde 3-phosphate reductase -
  HUW50_RS12305 (HUW50_12305) - 2587148..2587537 (+) 390 WP_185653955.1 ribbon-helix-helix protein, CopG family -
  HUW50_RS12310 (HUW50_12310) ceuB 2587971..2588927 (+) 957 WP_185653956.1 ABC transporter permease Machinery gene
  HUW50_RS12315 (HUW50_12315) - 2588914..2589870 (+) 957 WP_185653957.1 iron chelate uptake ABC transporter family permease subunit -
  HUW50_RS12320 (HUW50_12320) - 2589867..2590634 (+) 768 WP_185653958.1 ABC transporter ATP-binding protein -
  HUW50_RS12325 (HUW50_12325) - 2591075..2592121 (+) 1047 WP_185653959.1 siderophore ABC transporter substrate-binding protein -
  HUW50_RS12330 (HUW50_12330) - 2592354..2593322 (+) 969 WP_066337236.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34961.09 Da        Isoelectric Point: 8.6037

>NTDB_id=457308 HUW50_RS12310 WP_185653956.1 2587971..2588927(+) (ceuB) [Metabacillus sp. KUDC1714]
MRLWMLIIVTIVLSCVSLFIGAIDIKVSDLLDWDSDKTQLFFISRVPRLLAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFTNTSYIQEIIFCFVFALMGTFIFTQILDRIKFKDVIFVPLIGIMYGNILSSITTFFAYEADLI
QNISSWLMGSFTLVIAGRYELLYVSIPAVILAYLYANKFTVAGMGEDFAKNLGLSYKLVLNIGLILVAIISTTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVLGVAFLLTCDIIGRIIIHPYEIPVNVTVAVIGSAIFLIMLFRGRAYAEK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=457308 HUW50_RS12310 WP_185653956.1 2587971..2588927(+) (ceuB) [Metabacillus sp. KUDC1714]
ATGAGACTATGGATGTTAATAATTGTAACTATAGTCCTGTCATGTGTATCGCTATTTATAGGTGCGATTGATATTAAGGT
GAGTGACTTGCTGGATTGGGATTCTGATAAGACACAACTCTTTTTTATCAGTCGAGTGCCACGTTTATTGGCGATTATAT
TGGCGGGAGCAGGAATGAGTATTGCGGGTTTAATTATGCAGTCTTTAAGTCGAAATAAATTCGTCTCGCCAACGACTGCT
GGTACCTTAGACGCAGCAAAACTAGGAATATTAATCTCAATGCTGTTTTTTACGAATACATCGTATATTCAAGAAATTAT
TTTTTGCTTCGTATTTGCTTTAATGGGTACATTTATTTTCACGCAAATTCTAGATCGTATTAAATTTAAAGATGTTATTT
TCGTTCCGTTAATTGGGATTATGTACGGAAATATTTTGTCATCTATTACGACGTTTTTTGCATACGAGGCAGACCTTATT
CAAAATATTTCTTCATGGTTAATGGGGAGTTTCACATTAGTTATAGCTGGTCGCTATGAGCTCTTATATGTAAGTATACC
GGCGGTCATTTTAGCGTATCTCTATGCGAATAAATTTACCGTTGCAGGTATGGGTGAAGATTTTGCAAAGAACTTAGGCT
TAAGTTATAAGCTTGTGTTAAATATAGGTCTTATCCTTGTTGCGATCATTTCTACAACTGTCGTATTAACAGTAGGAGTT
ATTCCGTTTTTAGGTTTAATTGTACCTAATATTGTATCTCTTTATTTAGGTGATAATTTACGTAAAACAATTCCACATAC
AGCAGTATTAGGGGTTGCCTTTCTATTAACATGTGACATTATTGGGCGTATTATTATTCACCCTTATGAGATTCCAGTTA
ACGTAACTGTGGCAGTAATTGGTAGTGCGATCTTCTTAATTATGTTATTTAGGGGGAGAGCATATGCGGAAAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.063

99.371

0.547