Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   HUW50_RS04485 Genome accession   NZ_CP055263
Coordinates   922202..922852 (-) Length   216 a.a.
NCBI ID   WP_066330316.1    Uniprot ID   A0A179SZ44
Organism   Metabacillus sp. KUDC1714     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 917202..927852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW50_RS04455 (HUW50_04455) - 918566..919042 (+) 477 WP_066330310.1 Na+/H+ antiporter subunit E -
  HUW50_RS04460 (HUW50_04460) - 919042..919326 (+) 285 WP_066330311.1 Na(+)/H(+) antiporter subunit F1 -
  HUW50_RS04465 (HUW50_04465) mnhG 919310..919666 (+) 357 WP_066330312.1 monovalent cation/H(+) antiporter subunit G -
  HUW50_RS04470 (HUW50_04470) - 919727..920119 (-) 393 WP_066330313.1 hotdog fold thioesterase -
  HUW50_RS04475 (HUW50_04475) - 920566..921576 (-) 1011 WP_185653731.1 HAAS signaling domain-containing protein -
  HUW50_RS04480 (HUW50_04480) - 921563..921910 (-) 348 WP_066330315.1 PadR family transcriptional regulator -
  HUW50_RS04485 (HUW50_04485) comA 922202..922852 (-) 651 WP_066330316.1 response regulator transcription factor Regulator
  HUW50_RS04490 (HUW50_04490) comP 922970..925276 (-) 2307 WP_066330317.1 histidine kinase Regulator
  HUW50_RS04495 (HUW50_04495) comX 925307..925465 (-) 159 WP_083964559.1 competence pheromone ComX -
  HUW50_RS04500 (HUW50_04500) - 925481..926404 (-) 924 WP_083964560.1 polyprenyl synthetase family protein -
  HUW50_RS04505 (HUW50_04505) degQ 926571..926711 (-) 141 WP_066330318.1 degradation enzyme regulation protein DegQ -
  HUW50_RS04510 (HUW50_04510) - 927083..927307 (-) 225 WP_066330319.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24395.99 Da        Isoelectric Point: 5.1597

>NTDB_id=457287 HUW50_RS04485 WP_066330316.1 922202..922852(-) (comA) [Metabacillus sp. KUDC1714]
MKEKVNILVIDDHPAVREGTKAILEAEPGVQVTCLNPPYTEEAFEKIDFTPFDAILMDLNLGEINGIQLSKTILNMEHSC
KVILYTGYDVADYFEEAIAIGIHGAISKTESKERLLSFIRHSINGDIIVPYQYFKKMLFHKQSKVVETHSINNVFNDREK
AILQEVEKGLTNQEIADNLHLSKRSIEYSLTSIFNKLNVSTRTEAVLIAKAEGIIE

Nucleotide


Download         Length: 651 bp        

>NTDB_id=457287 HUW50_RS04485 WP_066330316.1 922202..922852(-) (comA) [Metabacillus sp. KUDC1714]
ATGAAGGAAAAGGTTAATATTTTAGTCATCGATGATCATCCGGCAGTAAGAGAAGGTACAAAAGCTATTCTTGAAGCAGA
ACCAGGGGTTCAAGTAACTTGTTTAAATCCTCCTTATACGGAGGAAGCTTTTGAAAAAATTGATTTTACCCCATTTGATG
CTATTCTTATGGATTTAAACCTGGGGGAAATAAATGGGATACAGCTTTCAAAAACAATCTTAAATATGGAACATTCATGT
AAAGTTATTCTTTACACTGGATATGATGTGGCGGATTATTTCGAGGAGGCCATTGCTATTGGCATCCATGGTGCGATTAG
TAAGACTGAGTCTAAGGAAAGACTGTTATCATTTATACGCCATTCAATAAACGGTGATATTATTGTACCATACCAATATT
TCAAGAAGATGCTTTTTCATAAACAATCAAAGGTTGTGGAGACACATTCAATTAATAATGTTTTTAATGACCGTGAAAAG
GCGATTTTACAAGAAGTTGAAAAAGGTTTAACCAATCAGGAAATTGCTGACAATCTTCACTTAAGTAAAAGATCAATTGA
ATATAGCCTGACGTCAATTTTTAATAAATTAAATGTAAGTACACGTACTGAGGCAGTTTTAATTGCAAAGGCAGAAGGAA
TTATTGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A179SZ44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

60.19

97.685

0.588