Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HUW50_RS00320 Genome accession   NZ_CP055263
Coordinates   67563..69263 (-) Length   566 a.a.
NCBI ID   WP_066335380.1    Uniprot ID   -
Organism   Metabacillus sp. KUDC1714     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 62563..74263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW50_RS00295 (HUW50_00295) - 62929..63342 (-) 414 WP_157094434.1 hypothetical protein -
  HUW50_RS00300 (HUW50_00300) - 63368..64159 (-) 792 WP_066335402.1 hypothetical protein -
  HUW50_RS26915 - 64627..64776 (-) 150 WP_232329056.1 site-specific integrase -
  HUW50_RS00310 (HUW50_00310) spo0A 64973..65764 (-) 792 WP_066335384.1 sporulation transcription factor Spo0A -
  HUW50_RS00315 (HUW50_00315) spoIVB 66069..67307 (-) 1239 WP_066335539.1 SpoIVB peptidase -
  HUW50_RS00320 (HUW50_00320) recN 67563..69263 (-) 1701 WP_066335380.1 DNA repair protein RecN Machinery gene
  HUW50_RS00325 (HUW50_00325) ahrC 69317..69766 (-) 450 WP_066335377.1 transcriptional regulator AhrC/ArgR -
  HUW50_RS00330 (HUW50_00330) - 70037..70888 (-) 852 WP_185653563.1 TlyA family RNA methyltransferase -
  HUW50_RS00335 (HUW50_00335) dxs 70885..72786 (-) 1902 WP_185653564.1 1-deoxy-D-xylulose-5-phosphate synthase -
  HUW50_RS00340 (HUW50_00340) - 73112..73996 (-) 885 WP_260445635.1 polyprenyl synthetase family protein -
  HUW50_RS00345 (HUW50_00345) - 73993..74244 (-) 252 WP_066335363.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 63856.33 Da        Isoelectric Point: 4.9889

>NTDB_id=457274 HUW50_RS00320 WP_066335380.1 67563..69263(-) (recN) [Metabacillus sp. KUDC1714]
MLAELSIKNFAIIESLTVSFEKGLTVLTGETGAGKSIIIDAIHLLAGARGSSEFVRYGEKRAELEGLFLLDDEKHPVYTK
CDEFGIDVSDGMIVLRRDLSSSGKSICRINGKLVTIAILREIGQYLVDIHGQHDNQELMNEENHLTLLDQYGGKKVKQAL
GEYVEIYKSFDLLRKKITQLSENEQEMAHRLDLLQFQLEEIESANLQPKEDELLQEEKTQISNYEKIYESLQNSYNSLHG
EHKGLDWVGHAMSNLEDVGSINSTLKELSETISNAYYLLEDLSYQVRNELEALEFDPERLNFVESRLNEINHLKRKYGQS
VEEILTYSAKIEDEIDTIKNRDSHLHKLQKELDSVLQDLTIEANNVTSIRKNFAKVLIDEIHRELKELYMEKTTFDVNFA
KKRTSTNDLKYSPAGIDEVEFYLSTNPGEPLKQLSKTASGGELSRIMLAMKSIFSQHQGITSIIFDEVDTGVSGRVAQAI
AEKIYRVSNGSQVLCITHLPQVAAMADTHLYIAKETNTGRTKTSVKPLAEEEKIKEIGRMIAGVEVTELSKEHAKELLAL
AHTSKG

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=457274 HUW50_RS00320 WP_066335380.1 67563..69263(-) (recN) [Metabacillus sp. KUDC1714]
TTGTTAGCGGAATTATCTATAAAAAACTTTGCCATAATTGAGTCGTTAACTGTTTCTTTTGAAAAAGGACTAACAGTGTT
AACAGGAGAAACTGGTGCAGGTAAATCAATCATTATTGACGCAATTCATTTACTAGCTGGGGCTAGAGGATCTTCTGAAT
TTGTTCGCTACGGAGAGAAACGAGCAGAGCTTGAAGGGTTGTTCCTTTTAGATGATGAAAAACACCCTGTCTACACGAAA
TGTGACGAATTTGGCATTGATGTGAGCGACGGCATGATTGTTTTAAGACGGGATTTATCATCTTCAGGCAAAAGCATATG
TCGGATTAATGGAAAGCTTGTTACTATTGCAATCTTAAGGGAGATAGGACAGTATCTTGTTGATATTCATGGACAGCATG
ACAATCAGGAGCTTATGAATGAAGAGAATCATTTAACACTGCTTGACCAATATGGTGGAAAAAAAGTAAAGCAAGCACTT
GGAGAATATGTTGAAATTTATAAAAGCTTCGACTTGCTCCGGAAAAAAATCACCCAACTTTCGGAAAATGAGCAAGAGAT
GGCACATCGACTTGACCTCCTTCAATTTCAGTTAGAGGAAATAGAAAGTGCAAATTTACAACCAAAGGAAGATGAACTTC
TACAGGAAGAAAAAACTCAGATTTCTAACTATGAAAAAATTTATGAATCATTGCAAAATAGCTACAATTCACTACATGGT
GAGCACAAAGGACTAGATTGGGTCGGACATGCAATGAGTAATCTAGAAGATGTTGGTTCGATAAATTCTACCTTGAAGGA
GCTCTCTGAAACAATTTCAAATGCATATTATCTACTTGAGGATCTTTCATATCAAGTTCGGAATGAATTAGAAGCACTTG
AGTTTGATCCAGAGCGCTTAAATTTTGTAGAAAGTCGCTTAAATGAAATAAATCATTTAAAACGAAAATATGGGCAATCC
GTTGAGGAAATATTAACTTATTCTGCTAAAATTGAAGACGAAATTGATACGATCAAAAATCGTGACAGTCATTTACATAA
GCTACAAAAGGAGCTTGATTCTGTCCTTCAAGATCTAACGATTGAAGCAAATAATGTGACGAGCATTCGTAAAAATTTTG
CAAAAGTGTTGATTGATGAAATACATCGTGAGTTAAAAGAGCTTTATATGGAAAAAACAACCTTTGATGTAAACTTTGCT
AAAAAAAGAACTTCAACAAATGATCTGAAATATTCTCCTGCAGGTATTGATGAAGTGGAATTCTATTTGTCAACCAATCC
TGGTGAACCATTAAAGCAGCTTAGTAAAACCGCTTCTGGTGGTGAGCTTTCAAGGATAATGCTTGCAATGAAAAGCATAT
TCTCGCAGCACCAAGGAATTACCTCAATTATTTTTGATGAGGTTGATACAGGTGTTAGTGGACGTGTCGCACAAGCGATC
GCCGAAAAAATCTACCGTGTTTCAAACGGATCTCAGGTTTTATGTATAACACACTTACCACAAGTTGCGGCAATGGCTGA
CACTCATTTATATATAGCAAAAGAAACGAATACAGGCCGGACAAAAACAAGTGTTAAGCCGCTTGCTGAAGAGGAAAAAA
TTAAAGAAATAGGTCGCATGATAGCTGGTGTTGAAGTTACTGAGCTATCAAAGGAACATGCAAAAGAACTCCTAGCACTT
GCACATACATCAAAAGGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

69.512

100

0.705