Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUU84_RS15540 Genome accession   NZ_CP055256
Coordinates   3172898..3173527 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain AH25     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3167898..3178527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUU84_RS15525 (HUU84_15525) helD 3168140..3170194 (-) 2055 WP_000420536.1 DNA helicase IV -
  HUU84_RS15530 (HUU84_15530) yccF 3170317..3170763 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HUU84_RS15535 (HUU84_15535) yccS 3170773..3172935 (+) 2163 WP_000875020.1 YccS family putative transporter -
  HUU84_RS15540 (HUU84_15540) sxy/tfoX 3172898..3173527 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HUU84_RS15545 (HUU84_15545) sulA 3173746..3174255 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HUU84_RS15550 (HUU84_15550) ompA 3174612..3175652 (+) 1041 WP_000750416.1 porin OmpA -
  HUU84_RS15555 (HUU84_15555) matP 3175728..3176180 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HUU84_RS15560 (HUU84_15560) ycbZ 3176366..3178126 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=457242 HUU84_RS15540 WP_000839153.1 3172898..3173527(-) (sxy/tfoX) [Escherichia coli strain AH25]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=457242 HUU84_RS15540 WP_000839153.1 3172898..3173527(-) (sxy/tfoX) [Escherichia coli strain AH25]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1