Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUU83_RS07920 Genome accession   NZ_CP055251
Coordinates   1673389..1674018 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain AH01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1668389..1679018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUU83_RS07900 (HUU83_07900) ycbZ 1668790..1670550 (-) 1761 WP_000156526.1 Lon protease family protein -
  HUU83_RS07905 (HUU83_07905) matP 1670736..1671188 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HUU83_RS07910 (HUU83_07910) ompA 1671264..1672304 (-) 1041 WP_000750416.1 porin OmpA -
  HUU83_RS07915 (HUU83_07915) sulA 1672661..1673170 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HUU83_RS07920 (HUU83_07920) sxy/tfoX 1673389..1674018 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HUU83_RS07925 (HUU83_07925) yccS 1673981..1676143 (-) 2163 WP_000875020.1 YccS family putative transporter -
  HUU83_RS07930 (HUU83_07930) yccF 1676153..1676599 (-) 447 WP_124783512.1 YccF domain-containing protein -
  HUU83_RS07935 (HUU83_07935) helD 1676722..1678776 (+) 2055 WP_176285506.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=457212 HUU83_RS07920 WP_000839153.1 1673389..1674018(+) (sxy/tfoX) [Escherichia coli strain AH01]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=457212 HUU83_RS07920 WP_000839153.1 1673389..1674018(+) (sxy/tfoX) [Escherichia coli strain AH01]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1