Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HU255_RS07325 Genome accession   NZ_CP055232
Coordinates   1609801..1611480 (-) Length   559 a.a.
NCBI ID   WP_178286560.1    Uniprot ID   -
Organism   Enterococcus hirae strain 708     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1604801..1616480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU255_RS07295 (HU255_07295) ftsL 1605829..1606224 (-) 396 WP_010719782.1 cell division protein FtsL -
  HU255_RS07300 (HU255_07300) rsmH 1606229..1607188 (-) 960 WP_053766114.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  HU255_RS07305 (HU255_07305) mraZ 1607209..1607640 (-) 432 WP_014834189.1 division/cell wall cluster transcriptional repressor MraZ -
  HU255_RS07310 (HU255_07310) - 1607812..1608180 (-) 369 WP_010719785.1 DUF3397 domain-containing protein -
  HU255_RS07315 (HU255_07315) - 1608436..1609392 (+) 957 WP_096709308.1 magnesium transporter CorA family protein -
  HU255_RS07320 (HU255_07320) - 1609462..1609578 (+) 117 WP_010719787.1 DUF4044 domain-containing protein -
  HU255_RS07325 (HU255_07325) recN 1609801..1611480 (-) 1680 WP_178286560.1 DNA repair protein RecN Machinery gene
  HU255_RS07330 (HU255_07330) argR 1611498..1611947 (-) 450 WP_010719789.1 arginine repressor -
  HU255_RS07335 (HU255_07335) - 1612047..1612865 (-) 819 WP_010738204.1 TlyA family RNA methyltransferase -
  HU255_RS07340 (HU255_07340) - 1612880..1613764 (-) 885 WP_010719791.1 polyprenyl synthetase family protein -
  HU255_RS07345 (HU255_07345) - 1613764..1613988 (-) 225 WP_010719792.1 exodeoxyribonuclease VII small subunit -
  HU255_RS07350 (HU255_07350) xseA 1613994..1615334 (-) 1341 WP_178286562.1 exodeoxyribonuclease VII large subunit -
  HU255_RS07355 (HU255_07355) - 1615335..1616180 (-) 846 WP_063626747.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 63034.31 Da        Isoelectric Point: 4.5725

>NTDB_id=457096 HU255_RS07325 WP_178286560.1 1609801..1611480(-) (recN) [Enterococcus hirae strain 708]
MLQEISITNFAIIPELHLSFHKGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGADKCILEGLFEWPSQEGFTELM
EELGIESDGDNLIVRRDMALTGKNVCRVNGHIVTLANLRRIGSYLVDIQGQNEHQELLQPEAHLNLLDRFGDRIFQQQKK
KYQKEYAIYRELERKMRKVQQNEKSFVQRIDMLHFQQEEIAAADLQVGEEEQLSEEREKLSNYQKIVDSFASGYSALSAG
EPSSVDNVGLAVSELQSIAHLDNEYEAIVENVQSAYYLLQDAIGDMSRQIDLLELDENRLEEVNQRLELIRQLKRKYGES
VEAILDYYEEITKELDSSDFSEGQLEKMQLELTKKETFLQEQALALHKTRKKIAKELEKSILTELKSLYMENTEFEVRFS
SEKNGQLDANGLDQVEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
SQISCHSQVLCITHLPQVAAVADFQYYIQKEVIDGRTQTSVTELQPTQRETEIARMLAGSEITPLTVEHAKELLRLASK

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=457096 HU255_RS07325 WP_178286560.1 1609801..1611480(-) (recN) [Enterococcus hirae strain 708]
TTGTTACAAGAGATCAGTATTACTAATTTTGCGATTATTCCGGAATTGCATTTGTCTTTCCATAAAGGAATGACAGCTCT
AACTGGCGAGACCGGGGCAGGTAAATCGATTATCATTGATGCCCTTGGATTACTGGCTGGTGGTAGAGGCTCCAGTGATT
ATATTCGCCAAGGAGCCGATAAGTGTATCTTAGAAGGGTTGTTTGAATGGCCAAGTCAAGAAGGATTTACTGAATTGATG
GAAGAACTTGGCATCGAATCAGATGGTGATAACTTGATTGTTCGTCGTGATATGGCATTAACGGGTAAAAATGTCTGCCG
AGTCAATGGACATATTGTTACGCTGGCAAACCTTAGAAGGATCGGAAGTTATCTAGTCGATATTCAAGGACAAAATGAAC
ACCAAGAGCTATTACAACCAGAAGCTCATTTGAATTTATTGGATCGTTTTGGTGATCGTATTTTTCAACAACAAAAGAAA
AAATATCAAAAAGAGTATGCTATCTATCGTGAGCTCGAACGAAAAATGCGGAAAGTCCAACAAAATGAAAAATCATTTGT
TCAACGGATCGACATGCTTCATTTTCAACAAGAAGAAATCGCAGCAGCTGATTTACAAGTTGGCGAAGAGGAACAGTTAA
GCGAGGAAAGAGAAAAATTAAGCAATTATCAAAAGATCGTGGATAGTTTTGCTAGTGGTTATAGTGCATTGAGTGCGGGA
GAACCCAGTAGTGTGGATAACGTTGGTTTAGCTGTTTCTGAACTACAAAGCATTGCTCATCTAGATAATGAATATGAAGC
AATCGTTGAGAATGTTCAAAGTGCTTATTATTTACTTCAAGATGCCATTGGTGACATGAGTCGCCAAATCGATCTGCTGG
AATTGGATGAAAACCGATTAGAAGAAGTCAATCAACGGCTTGAATTGATTCGTCAGTTGAAACGCAAATATGGGGAGTCA
GTGGAAGCAATCCTTGATTATTACGAAGAAATCACTAAAGAACTGGATTCTTCTGATTTCTCAGAAGGTCAACTAGAAAA
GATGCAACTGGAATTAACTAAAAAAGAAACGTTCTTGCAAGAACAAGCATTAGCACTGCATAAAACAAGAAAAAAAATCG
CTAAAGAACTAGAAAAATCAATCTTAACAGAATTAAAAAGTTTATATATGGAAAACACGGAGTTTGAAGTCCGTTTTTCA
TCTGAAAAAAATGGACAATTAGATGCTAATGGATTGGACCAAGTGGAATTTTACATAACCACAAATCCTGGAGAACCATT
GAAGCCATTAGTAAAAGTCGCCTCGGGTGGGGAACTATCACGTATGTTGTTGGCGTTAAAAACTATTTTTTCTTCAGAAC
AAGGTGTGACTAGTATCATTTTTGATGAAGTGGATACAGGAGTAAGCGGTCGAGTTGCCCAAGCGATTGCAGATAAGATC
TCGCAGATCTCATGTCACTCACAAGTTTTGTGTATTACCCATCTACCGCAAGTCGCTGCAGTTGCCGATTTTCAATACTA
TATTCAAAAAGAAGTCATTGATGGGCGTACCCAAACATCGGTTACCGAACTACAACCCACACAACGAGAAACCGAAATTG
CCCGAATGTTAGCTGGAAGTGAAATTACCCCACTAACAGTCGAGCATGCCAAAGAATTATTACGCTTAGCAAGTAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.476

100

0.506