Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   HU256_RS11150 Genome accession   NZ_CP055231
Coordinates   2346154..2347968 (-) Length   604 a.a.
NCBI ID   WP_135982027.1    Uniprot ID   -
Organism   Enterococcus hirae strain 13144     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2341154..2352968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU256_RS11130 (HU256_11130) - 2341229..2342686 (+) 1458 WP_034699920.1 glycoside-pentoside-hexuronide (GPH):cation symporter -
  HU256_RS11135 (HU256_11135) - 2342702..2343736 (+) 1035 WP_010737102.1 aldose epimerase family protein -
  HU256_RS11140 (HU256_11140) - 2343739..2344926 (+) 1188 WP_010720860.1 galactokinase -
  HU256_RS11145 (HU256_11145) - 2345143..2345610 (-) 468 WP_034867740.1 DUF4809 family protein -
  HU256_RS11150 (HU256_11150) pepF 2346154..2347968 (-) 1815 WP_135982027.1 oligoendopeptidase F Regulator
  HU256_RS11155 (HU256_11155) - 2348091..2349086 (-) 996 WP_010737098.1 competence protein CoiA -
  HU256_RS11160 (HU256_11160) - 2349187..2349834 (-) 648 WP_010720865.1 adaptor protein MecA -
  HU256_RS11165 (HU256_11165) spxA 2350222..2350620 (-) 399 WP_002296384.1 transcriptional regulator SpxA -
  HU256_RS11170 (HU256_11170) - 2351399..2352106 (+) 708 WP_010720866.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69981.31 Da        Isoelectric Point: 4.7624

>NTDB_id=457071 HU256_RS11150 WP_135982027.1 2346154..2347968(-) (pepF) [Enterococcus hirae strain 13144]
MSETTQLPKREELPEELTWDLTKIFSSDQEFDEKYQELTEELKNSDQYKGTLAKGATEFLNALEFVLDVYRKVELIYVYA
HLKNDQDTANTTYQALYARAGSLFSKVSEAVSWYEPEVLQLSDEQIWQYFEQEPKLELYRHYVKQMVDNRAHILSAEQES
LLAGAGEIFGASSDTFAVLNNADLEFPTIVGEDGKKIQLSHGVYGQLMESTDRTVREAAFKGLYRVYDQFKNTFASTLST
HIKGHNYKAKIRHYHSAREDSLSNNHIPESVYDTLIEVVNKNLPLLHRYMELRKRLLNVEKLHMYDLYTPVLGEAPIKFT
YEEAKQKALEALAPMGEEYLSVVEKAFADRWIDVIENKGKRSGAYSSGSYDTNPYILMNWHDTLDQLFTLVHEMGHSVHS
YFTRSNQPFVYGDYSIFLAEIASTTNENILTEYLLETEQDPRVRAYVLNHYLDGFKGTIFRQTQFAEFEHFMHEEDAKGV
PLTSEYLSDSYGELNAKYYGSAVEKDPEIKYEWSRIPHFYYNYYVYQYATGFSAASALAHKIWGQEPDALEKYLTYLKSG
NSDYPVEVMKKAGVDMTKADYIESAMTKFEQRLNELEELVEKLS

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=457071 HU256_RS11150 WP_135982027.1 2346154..2347968(-) (pepF) [Enterococcus hirae strain 13144]
ATGAGTGAAACGACCCAATTACCAAAACGAGAAGAATTGCCTGAAGAACTGACTTGGGATCTCACCAAAATCTTTTCTAG
CGATCAAGAATTTGATGAAAAATACCAAGAATTAACAGAAGAATTAAAAAATTCCGATCAATATAAAGGAACATTAGCAA
AGGGTGCGACAGAATTTCTGAATGCGCTTGAATTTGTTTTAGATGTTTACCGAAAAGTGGAACTCATTTATGTCTATGCT
CATTTAAAAAATGACCAAGATACAGCAAATACGACTTATCAAGCGTTATATGCGAGAGCAGGAAGTTTATTTTCTAAAGT
AAGTGAAGCAGTCTCTTGGTATGAACCAGAAGTCCTTCAACTTTCGGATGAGCAGATTTGGCAGTATTTTGAGCAAGAGC
CGAAGTTAGAACTGTATCGTCATTACGTAAAACAAATGGTGGATAATCGTGCGCATATATTATCTGCAGAACAAGAATCA
TTACTAGCTGGAGCAGGAGAAATTTTTGGCGCTTCCAGTGATACATTTGCTGTTTTAAACAATGCCGATCTAGAGTTTCC
TACGATCGTGGGAGAAGATGGGAAAAAAATCCAGCTTTCTCATGGTGTCTATGGTCAATTGATGGAAAGCACAGATCGTA
CAGTTAGAGAAGCTGCATTCAAAGGGCTTTATCGTGTCTATGATCAATTTAAAAATACGTTTGCTTCAACATTGAGTACC
CATATCAAAGGGCACAATTACAAAGCAAAAATTCGCCATTATCATTCTGCTAGAGAAGATTCTTTGAGCAACAATCATAT
CCCAGAAAGTGTTTATGATACATTGATTGAAGTAGTCAATAAAAATCTTCCGCTATTGCATCGCTATATGGAATTACGCA
AACGTCTTTTAAATGTAGAAAAACTGCATATGTATGATCTATATACACCAGTATTAGGAGAAGCTCCTATCAAGTTCACT
TACGAAGAAGCGAAACAGAAAGCTTTGGAAGCTTTGGCACCAATGGGGGAAGAATATCTGTCAGTGGTAGAAAAAGCTTT
TGCTGACCGTTGGATCGATGTGATCGAAAATAAAGGGAAACGAAGTGGCGCTTATTCTTCAGGAAGCTATGATACCAATC
CTTATATTTTAATGAACTGGCATGATACGTTGGATCAATTATTTACGCTCGTACATGAAATGGGACATAGTGTGCATAGT
TACTTTACTCGTTCAAATCAACCGTTTGTTTACGGTGATTATTCCATTTTCTTAGCAGAGATTGCTTCAACAACTAATGA
AAATATTTTGACAGAATACTTGCTTGAAACTGAACAAGATCCACGTGTTCGTGCATATGTCTTGAATCATTATCTTGATG
GATTCAAAGGAACGATTTTCAGACAAACACAATTTGCAGAATTTGAGCATTTCATGCATGAAGAAGATGCCAAAGGTGTA
CCTTTGACCAGTGAATATCTAAGCGACAGTTATGGGGAATTGAATGCCAAATATTATGGATCAGCGGTAGAAAAAGATCC
GGAAATCAAATATGAATGGTCTCGTATCCCACATTTCTACTATAATTATTATGTTTATCAATATGCAACAGGCTTTTCAG
CTGCCTCTGCTTTGGCGCATAAAATTTGGGGTCAAGAGCCAGATGCTCTAGAAAAATACCTTACTTATTTGAAATCAGGA
AATAGTGATTACCCAGTTGAAGTCATGAAAAAAGCAGGCGTCGACATGACAAAAGCTGATTATATCGAATCAGCTATGAC
TAAGTTTGAACAACGATTAAATGAATTAGAGGAACTAGTTGAAAAATTGTCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.397

98.344

0.555