Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HU256_RS04040 Genome accession   NZ_CP055231
Coordinates   846522..848201 (+) Length   559 a.a.
NCBI ID   WP_178243772.1    Uniprot ID   -
Organism   Enterococcus hirae strain 13144     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 841522..853201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU256_RS04010 (HU256_04010) - 841822..842667 (+) 846 WP_010738206.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  HU256_RS04015 (HU256_04015) xseA 842668..844008 (+) 1341 WP_010738205.1 exodeoxyribonuclease VII large subunit -
  HU256_RS04020 (HU256_04020) - 844014..844238 (+) 225 WP_010719792.1 exodeoxyribonuclease VII small subunit -
  HU256_RS04025 (HU256_04025) - 844238..845122 (+) 885 WP_010719791.1 polyprenyl synthetase family protein -
  HU256_RS04030 (HU256_04030) - 845137..845955 (+) 819 WP_010738204.1 TlyA family RNA methyltransferase -
  HU256_RS04035 (HU256_04035) - 846055..846504 (+) 450 WP_178243770.1 arginine repressor -
  HU256_RS04040 (HU256_04040) recN 846522..848201 (+) 1680 WP_178243772.1 DNA repair protein RecN Machinery gene
  HU256_RS04045 (HU256_04045) - 848424..848540 (-) 117 WP_010719787.1 DUF4044 domain-containing protein -
  HU256_RS04050 (HU256_04050) - 848610..849566 (-) 957 WP_010738203.1 magnesium transporter CorA family protein -
  HU256_RS04055 (HU256_04055) - 849822..850190 (+) 369 WP_010719785.1 DUF3397 domain-containing protein -
  HU256_RS04060 (HU256_04060) mraZ 850362..850793 (+) 432 WP_014834189.1 division/cell wall cluster transcriptional repressor MraZ -
  HU256_RS04065 (HU256_04065) rsmH 850814..851773 (+) 960 WP_010738202.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  HU256_RS04070 (HU256_04070) ftsL 851778..852173 (+) 396 WP_010719782.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 63066.26 Da        Isoelectric Point: 4.5510

>NTDB_id=457055 HU256_RS04040 WP_178243772.1 846522..848201(+) (recN) [Enterococcus hirae strain 13144]
MLQEISITNFAIIPELHLSFHKGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGADKCILEGLFEWPSQEGFTELM
EELGIESDGDNLIVRRDMALTGKNVCRVNGHIVTLANLRRIGSYLVDIQGQNEHQELLQPEAHLNLLDRFGDRTFQQQKK
KYQKEYAIYRELERKMRKVQQNEKSFVQRIDMLHFQQEEIAAADLQVGEEEQLSEEREKLSNYQKIVDSFASGYSALSAG
EPSSVDNVGLAVSELQSIDHLDNEYEAIVENVQSAYYLLQDAIGDMSRQIDLLELDENRLEEVNQRLELIRQLKRKYGES
VEAILDYYEEITKELDSSDFSEGQLEKMQLELTKKETFLQEQALALHKTRKKIAKELEKSILTELKSLYMENTEFEVRFS
SEKNGQLDANGLDQVEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
SQISCHSQVLCITHLPQVAAVADFQYYIQKEVIDGRTQTSVTELQPTQRETEIARMLAGSEITPLTVEHAKELLRLASK

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=457055 HU256_RS04040 WP_178243772.1 846522..848201(+) (recN) [Enterococcus hirae strain 13144]
TTGTTACAAGAGATCAGTATTACTAATTTTGCGATTATTCCGGAATTGCATTTGTCTTTCCATAAAGGAATGACAGCTCT
AACTGGCGAGACCGGGGCAGGTAAATCGATTATCATTGATGCCCTTGGATTACTGGCTGGTGGTAGAGGCTCCAGTGATT
ATATTCGCCAAGGAGCCGATAAGTGTATCTTAGAAGGGTTGTTTGAATGGCCAAGTCAAGAAGGATTTACTGAATTGATG
GAAGAACTGGGCATCGAATCAGATGGTGATAACTTGATTGTTCGTCGTGATATGGCATTAACGGGTAAAAATGTCTGCCG
AGTCAATGGACATATTGTTACGCTGGCAAACCTTAGAAGGATCGGAAGTTATCTAGTTGATATTCAAGGACAAAATGAAC
ACCAGGAGCTATTACAACCAGAAGCCCATTTAAATTTATTGGATCGTTTTGGTGATCGTACTTTTCAACAACAAAAGAAA
AAATATCAAAAAGAGTATGCTATCTATCGTGAGCTCGAACGAAAAATGCGGAAAGTCCAACAAAATGAAAAATCATTTGT
TCAACGGATCGACATGCTTCATTTTCAACAAGAAGAAATCGCAGCAGCTGATTTACAAGTTGGCGAAGAGGAACAGTTAA
GCGAGGAAAGAGAAAAATTAAGCAATTATCAAAAGATCGTGGATAGTTTTGCTAGTGGTTATAGTGCATTGAGTGCGGGA
GAACCCAGTAGTGTGGATAACGTTGGTTTAGCTGTTTCTGAACTACAAAGCATTGATCATCTAGATAATGAATATGAAGC
AATCGTTGAGAATGTTCAAAGTGCTTATTATTTACTTCAAGATGCCATTGGTGACATGAGTCGCCAAATCGATCTGTTGG
AATTGGATGAAAACCGATTAGAAGAAGTCAATCAACGGCTTGAATTGATTCGTCAGTTGAAACGCAAATATGGGGAGTCA
GTGGAAGCAATCCTTGATTATTACGAAGAAATCACTAAAGAACTGGATTCTTCTGATTTCTCAGAAGGTCAACTAGAAAA
AATGCAACTGGAATTAACTAAAAAAGAAACGTTCTTGCAAGAACAAGCATTAGCACTGCATAAAACAAGAAAAAAAATTG
CTAAAGAACTAGAAAAATCAATCTTAACGGAATTAAAAAGTCTATATATGGAAAACACTGAGTTTGAAGTCCGTTTTTCA
TCTGAAAAAAATGGACAATTAGATGCTAATGGATTGGACCAAGTGGAATTTTACATAACCACAAATCCTGGAGAACCATT
GAAGCCATTAGTAAAAGTTGCCTCGGGTGGGGAACTATCACGTATGTTGTTGGCGTTAAAAACTATTTTTTCTTCAGAAC
AAGGTGTGACTAGTATCATTTTTGATGAAGTGGATACAGGAGTAAGCGGCCGAGTTGCCCAAGCGATTGCAGATAAGATC
TCACAGATCTCATGTCACTCACAAGTTTTGTGTATCACCCATTTACCGCAAGTCGCTGCAGTTGCCGATTTTCAATACTA
TATTCAAAAAGAAGTCATTGATGGGCGTACCCAAACATCGGTTACCGAACTACAACCCACACAACGAGAAACCGAAATTG
CCCGAATGTTAGCTGGAAGTGAAATTACCCCATTAACAGTCGAGCATGCCAAAGAATTATTACGCTTAGCAAGTAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.649

100

0.506