Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HU257_RS11405 Genome accession   NZ_CP055230
Coordinates   2520742..2521989 (+) Length   415 a.a.
NCBI ID   WP_081204242.1    Uniprot ID   -
Organism   Enterococcus hirae strain 13152     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 2515742..2526989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU257_RS11385 (HU257_11385) yfmF 2516009..2517277 (+) 1269 WP_160231917.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  HU257_RS11390 (HU257_11390) yfmH 2517270..2518559 (+) 1290 WP_178306312.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  HU257_RS11395 (HU257_11395) - 2518789..2519679 (+) 891 WP_010720624.1 RodZ domain-containing protein -
  HU257_RS11400 (HU257_11400) pgsA 2519848..2520426 (+) 579 WP_010720623.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HU257_RS11405 (HU257_11405) cinA 2520742..2521989 (+) 1248 WP_081204242.1 competence/damage-inducible protein A Machinery gene
  HU257_RS11410 (HU257_11410) recA 2522095..2523135 (+) 1041 WP_010720621.1 recombinase RecA Machinery gene
  HU257_RS11415 (HU257_11415) rny 2523704..2525260 (+) 1557 WP_010720620.1 ribonuclease Y -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45740.12 Da        Isoelectric Point: 4.7334

>NTDB_id=457035 HU257_RS11405 WP_081204242.1 2520742..2521989(+) (cinA) [Enterococcus hirae strain 13152]
MKSEIIAVGTELLLGQVVNTNATFLSEQLADLGIDVYYQTVVGDNPDRLESLLQLAETRSDLIILCGGLGPTEDDLTKEV
TAKHLGEELIQNTEGYKKLLAFFETTKRKMTENNLQQSQIIDGGIALPNRTGLALGTFYQTADHVYLLLPGPPSELKPMF
IEQARPLLEQNFPSEEMLISKVLRFYGIGESQLVTELKDLIETQINPTIAPYAKPNEVTLRLTVKTKDKHAGNQALLALE
EKVLARVGEYFYGYGDDNSLPKVVVELLKERNQTITAAESLTAGAFQSALGEISGVSQVFPGGFITYSLETKAEFLHIDD
ALLKQHGTVSQECAEQMAIQARNLAKTDYAISFTGVAGPDTLEGQPAGTVWIAVATSEGEVISQKYQFTRDRSHIRNSAV
MQGFDLIRRQLLRKK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=457035 HU257_RS11405 WP_081204242.1 2520742..2521989(+) (cinA) [Enterococcus hirae strain 13152]
ATGAAATCAGAAATCATAGCAGTAGGGACAGAACTTTTACTAGGACAAGTAGTCAACACGAATGCCACGTTTTTATCCGA
ACAGTTAGCAGACCTCGGGATTGATGTGTATTATCAAACGGTGGTTGGTGATAATCCCGACCGCTTAGAATCATTACTCC
AATTAGCAGAAACCAGAAGTGACTTGATCATTTTATGTGGAGGGTTGGGACCGACAGAAGACGACCTGACGAAAGAAGTT
ACTGCGAAACATCTAGGGGAAGAATTGATCCAAAACACCGAAGGCTATAAAAAATTGTTAGCATTTTTTGAAACGACCAA
GCGTAAAATGACTGAAAACAATTTACAACAATCACAAATCATCGATGGGGGGATTGCTTTACCTAATCGCACAGGCTTAG
CATTAGGTACGTTCTATCAAACAGCAGACCATGTCTATCTCTTGTTACCTGGACCACCGAGTGAATTAAAGCCAATGTTC
ATTGAACAAGCTCGCCCATTATTGGAGCAAAACTTTCCATCTGAAGAAATGCTGATCTCAAAAGTTTTACGTTTTTACGG
TATCGGGGAATCCCAACTAGTCACAGAATTAAAAGACTTGATTGAAACACAGATCAACCCAACGATTGCCCCTTACGCAA
AACCTAACGAAGTCACTTTACGATTAACTGTGAAGACCAAAGACAAACATGCAGGAAACCAAGCCTTACTTGCTTTGGAA
GAAAAAGTATTGGCGAGAGTAGGTGAGTACTTCTATGGATATGGTGATGATAATTCATTGCCTAAAGTGGTCGTAGAATT
ATTAAAGGAAAGAAACCAAACAATAACTGCAGCAGAAAGTTTGACTGCTGGAGCCTTTCAATCAGCTTTGGGAGAGATCT
CTGGTGTTTCTCAAGTCTTCCCAGGAGGCTTCATTACCTATTCTTTAGAAACTAAAGCAGAATTTTTACACATCGATGAT
GCACTATTGAAGCAGCATGGAACCGTCAGCCAAGAATGTGCAGAACAAATGGCTATCCAAGCACGTAATTTAGCAAAAAC
AGATTATGCGATTTCGTTTACTGGAGTGGCTGGACCAGATACCTTAGAAGGACAGCCAGCTGGAACAGTTTGGATCGCGG
TTGCAACAAGTGAAGGGGAGGTCATTTCGCAGAAATACCAATTTACCAGAGACCGTTCTCATATAAGGAATAGCGCAGTA
ATGCAAGGATTTGATCTCATTAGAAGACAACTATTAAGAAAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-411)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

53.828

100

0.542
  cinA Streptococcus pneumoniae TIGR4

52.381

100

0.53
  cinA Streptococcus pneumoniae Rx1

52.143

100

0.528
  cinA Streptococcus pneumoniae R6

52.143

100

0.528
  cinA Streptococcus mitis SK321

52.143

100

0.528
  cinA Streptococcus pneumoniae D39

52.143

100

0.528
  cinA Streptococcus mitis NCTC 12261

51.667

100

0.523
  cinA Bacillus subtilis subsp. subtilis str. 168

47.458

99.518

0.472
  cinA Streptococcus suis isolate S10

42.857

100

0.434