Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   APECO78_RS23520 Genome accession   NC_020163
Coordinates   4703187..4704179 (+) Length   330 a.a.
NCBI ID   WP_000224461.1    Uniprot ID   -
Organism   Escherichia coli APEC O78     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4698187..4709179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APECO78_RS23495 (APECO78_22630) rbsD 4698311..4698730 (+) 420 WP_001364631.1 D-ribose pyranase -
  APECO78_RS23500 (APECO78_22635) rbsA 4698738..4700243 (+) 1506 WP_015364544.1 ribose ABC transporter ATP-binding protein RbsA -
  APECO78_RS23505 (APECO78_22640) rbsC 4700248..4701213 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  APECO78_RS23510 (APECO78_22645) rbsB 4701238..4702128 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  APECO78_RS23515 (APECO78_22650) rbsK 4702254..4703183 (+) 930 WP_001300603.1 ribokinase -
  APECO78_RS23520 (APECO78_22655) cytR 4703187..4704179 (+) 993 WP_000224461.1 ribose operon transcriptional repressor RbsR Regulator
  APECO78_RS23525 (APECO78_22660) mdtD 4704145..4705572 (-) 1428 WP_001280887.1 multidrug transporter subunit MdtD -
  APECO78_RS23530 (APECO78_22665) yieP 4705595..4706287 (-) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36541.85 Da        Isoelectric Point: 5.0626

>NTDB_id=45697 APECO78_RS23520 WP_000224461.1 4703187..4704179(+) (cytR) [Escherichia coli APEC O78]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPALLRLEGYRAAMKRAGLSIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=45697 APECO78_RS23520 WP_000224461.1 4703187..4704179(+) (cytR) [Escherichia coli APEC O78]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCTCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAGCATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.349

100

0.376
  cytR Vibrio cholerae C6706

39.088

93.03

0.364